Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41560 980 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 961 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G27770 879 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G37640 859 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 851 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT5G57110 611 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 607 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 595 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 570 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 542 / 1e-179 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016366 [exp] 1346 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 987 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 986 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 944 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 863 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 860 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 832 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 783 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 735 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020600 [exp] 1107 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 1063 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.016G043100 [exp] 976 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 972 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.007G055500 [exp] 870 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 852 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.010G250800 [exp] 608 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 608 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.005G052700 [exp] 601 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 597 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus PF12515 [flax] [poplar] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10019758 pacid=23139259 polypeptide=Lus10019758 locus=Lus10019758.g ID=Lus10019758.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTTCTGAGAGATAACTTCGACGTGGAGGCCAAGCGGCCGTCCGATGAAGCTCTACGGAGATGGAGGTCATCCGTCTCCGTCGTCAAGAACC CCCGCCGGCGCTTTCGCATGGTCGCAGATCTCGCCAAACGTGCTGAGGCCGATCGGAAACGTAAAAAACTCCAGGAAAAGATAAGAGTGGCTCTGTATGT TCAGAAAGCAGCACTGCAATTCATTGATGCGGGCGATGAAGAGACACCGTTACAAGTGAAGCTCAACGGTGTAGCGACAATCATTGGGAAAATCGGTTTG GTTTTTGCTATGATGACATTTTTGGTTCTGTTGGGAAGGTACTTGGTTTTCAAGGCAGAACATAACCAGTTGACTGAATGGTCAATGAATGATGCATTAC AGCTGTTGAATTTCTTCGCGATCGCTGTCACTATCATCGTCGTTGCTGTCCCCGAGGGGCTACCCTTGGCAGTGACATTGAGTCTTGCATTTGCTATGAA GAAGCTGATGAATGATAAAGCTCTTGTGAGGCATTTATCTGCTTGTGAGACTATGGGGTCTTCTAGCTGCATTTGTACCGATAAAACCGGAACCTTGACC ACGAACCATATGGTGGTCAACAAAGTATGGCTATGTGGAGAAACAAAACCAGTTTCTAATAATATCAAGAATGTTGTGAAGTCAGTTGTGTCGGAATCTG TGTTTGAAATGCTCATTCAGTCAATATTCCAGAACACCGGGTCCGAGGTTGTGAAGGGGAAAGATGGCAAGACTAACATTTTGGGGACACCAACTGACAC TGCAATCCTGGAGTTTGGAATGCTGTTAGGGGGTGATTTCAAAGTCCACAGAAGAGAATCCGATATTGTTAAAGTCGAGCCTTTTAACTCGGTTAAGAAG AAGATGTCAGCGCTGATAACCCTTCCCGATCGAAAAGGGTTTCGAGCATTCTGTAAAGGTGCATCTGAGATTATCCTCAAGGTGTGTGATAAAGTTATAG GTCCTGATGGAAAAGAAGCTCCGTTGACCGATCAGGTAAGGAGGAAGATCACGAGTGTGATAGATCAGTTCGCGAACGAAGCTTTAAGGACACTTTGCTT GGCTTACAAGGAACTGGGGAAGGCCGTGTCGAAAGGCGGAAATATTCCTGAAGAAGGTTACACATTGATAGCTATTGTTGGGATTAAGGATCCGGTTAGG CCGGGGGTTAAGGAAGCTGTCAGGACTTGCTTAGCTGCTGGGATTAAGGTTAGGATGGTTACTGGTGACAACATTAATACAGCAAAAGCTATTGCTAGGG AATGTGGCATCTTGACCGAGGATGGCTTGGCTATCGAGGGGTCAGATTTTCGAGATAAGAGCCCGCAAGAGCTGGAGGATATTATACCAAGACTTCAGGT TATGGCTAGATCATTGCCATTGGACAAGCACAAGTTAGTAACACAATTGAGGAGTGTGTTCAAAGAAGTAGTGGCAGTCACTGGAGATGGGACTAATGAT GCTCCTGCTTTGGCTGAGGCTGACATTGGACTTGCTATGGGTATAGCAGGAACTGAGGTTGCAAAAGAAAGTGCAGACGTGATCATAATGGATGACAACT TCACAACAATAGTGAATGTGGCCAAATGGGGGAGATCAGTATACATCAACATCCAGAAATTTGTCCAGTTTCAGTTAACAGTCAATGTAGTTGCTCTAAT GATCAACTTCATCTCTGCTTGCATCTCAGGTGAAGCTCCACTGACCACTGTCCAGTTGCTTTGGGTGAACCTGATCATGGACACTCTTGGAGCACTGGCT CTGGCAACTGAGCCACCTCATGAAGGGCTGATGAAGAGACCTCCGATCGGAAGGAATGTGAACTTCATTACGAAAGTCATGTGGAGAAACATCATAGGGC AGAGCTTCTACCAGATTGTTGTTCTTGTAATCCTGCAATTCAAAGGGAAGCCATTGTTGAATCTTCATGGTCCTGATGCTACTCACACCATGAATACTTT CATATTCAATGCTTTCGTCTTCTGCCAGGTGTTCAACGAGATAAACAGCCGCGACATGGAGAAGCTGAACGTGTTCAGAGGGATCTTGGACAGCTGGGTA TTCATGGGGGTGATGGTCTCCACGGTAGTGTTCCAGATAGTGATGGTTGAGTTGCTGGGGACGTTTGCTGATACAGTGCCACTAAGCTGGGAGCTATGGG GGGTTAGCGTTTTGATTGGAGCAGTGAGTTTGATAGTTGCTCCAATCCTTAAGTGCATTCCTGTTGGTTCATCCCAAGGAGATGAATTTTCAGAGCAGCA TGATGGTTATGAACCTCTTCCTCGCGGCCCAGACATGGCTTGA
AA sequence Show only first row Show all	>Lus10019758 pacid=23139259 polypeptide=Lus10019758 locus=Lus10019758.g ID=Lus10019758.BGIv1.0 annot-version=v1.0 MEKFLRDNFDVEAKRPSDEALRRWRSSVSVVKNPRRRFRMVADLAKRAEADRKRKKLQEKIRVALYVQKAALQFIDAGDEETPLQVKLNGVATIIGKIGL VFAMMTFLVLLGRYLVFKAEHNQLTEWSMNDALQLLNFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSSSCICTDKTGTLT TNHMVVNKVWLCGETKPVSNNIKNVVKSVVSESVFEMLIQSIFQNTGSEVVKGKDGKTNILGTPTDTAILEFGMLLGGDFKVHRRESDIVKVEPFNSVKK KMSALITLPDRKGFRAFCKGASEIILKVCDKVIGPDGKEAPLTDQVRRKITSVIDQFANEALRTLCLAYKELGKAVSKGGNIPEEGYTLIAIVGIKDPVR PGVKEAVRTCLAAGIKVRMVTGDNINTAKAIARECGILTEDGLAIEGSDFRDKSPQELEDIIPRLQVMARSLPLDKHKLVTQLRSVFKEVVAVTGDGTND APALAEADIGLAMGIAGTEVAKESADVIIMDDNFTTIVNVAKWGRSVYINIQKFVQFQLTVNVVALMINFISACISGEAPLTTVQLLWVNLIMDTLGALA LATEPPHEGLMKRPPIGRNVNFITKVMWRNIIGQSFYQIVVLVILQFKGKPLLNLHGPDATHTMNTFIFNAFVFCQVFNEINSRDMEKLNVFRGILDSWV FMGVMVSTVVFQIVMVELLGTFADTVPLSWELWGVSVLIGAVSLIVAPILKCIPVGSSQGDEFSEQHDGYEPLPRGPDMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10019758 [exp]	0	1
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	10.2	0.8887
AT3G19990			unknown protein		Lus10028681 [exp]	21.6	0.8882
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	24.7	0.8821
AT5G54370			Late embryogenesis abundant (L...		Lus10031297 [exp]	27.5	0.8827
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10010404 [exp]	36.3	0.8728
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	37.9	0.8718
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10017634 [exp]	38.8	0.8693
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	40.5	0.8789
AT5G07200		ATGA20OX3, YAP1...	ARABIDOPSIS THALIANA GIBBERELL...		Lus10031671 [exp]	48.2	0.8540
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	51.2	0.8558

Compare expression of checked genes

Lus10019758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.