Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36550 89 / 2e-22 unknown protein AT2G36540 92 / 3e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G26190 89 / 3e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019759 [exp] 186 / 1e-58 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 81 / 2e-17 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 81 / 3e-17 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 79 / 1e-16 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 79 / 1e-16 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 76 / 3e-16 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 69 / 3e-14 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 42 / 0.0002 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244400 [exp] 107 / 5e-28 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 101 / 7e-26 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 84 / 1e-18 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 80 / 4e-17 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019760 pacid=23139298 polypeptide=Lus10019760 locus=Lus10019760.g ID=Lus10019760.BGIv1.0 annot-version=v1.0 ATGGCGGACGATGAAAACCAGAAAGGCGTCAACAGGAAGCTAAAATCAGTCGTCTACTATGACTCTGACTCCGACTACTGGGACTACTACGACTCCGACT CTGGCGACGAGGACAAAGGGGGAGATCTCCCAACTGACCTACTCTCACTCGGAAAGCTCAGCCTTGGTCCCAAAAAGAAACTGCTCATAATACCAGTTGG CGGATTCCTCTGCCACAGAGTATTCAAGTACAGGAAGAAGAACAAGTTCAGAGTCCCTCCGAATCTGGTCATCCTCCAACGAGATCAAGAAGAATGTACC GAAGCAATGTTTAAATGCTTGGACAACAAATTCAAGCCCATTTTCCTCAAGGACCTGAACTACGTATTTCAATCCCCCATGACGAAATCTGCGAAACAGA GTTACTCTGCTTCAAACACCTTATTGATTGAAAGTGATGAACAGCTTTTCCTCTTTCCTTATGAGTACACTGCAGATAAGGTGTCGGATAATGAGCTTGC GGCTTTTGGGAAGCTGAGGAAGTATCTTGATGAGCTTGCAGTAGCTGATGATGTGCCGTCTTTTGTTAAGGAGAATCCAATTAGGAAGCCTGCAATCTCG CCTACACATCCGGATTGGAGCTTTTACAGCAAGATCGTATATTGTCTACGACGGAAAGAAATGAAGAGCAACTTAGTTTAA
AA sequence Show only first row Show all	>Lus10019760 pacid=23139298 polypeptide=Lus10019760 locus=Lus10019760.g ID=Lus10019760.BGIv1.0 annot-version=v1.0 MADDENQKGVNRKLKSVVYYDSDSDYWDYYDSDSGDEDKGGDLPTDLLSLGKLSLGPKKKLLIIPVGGFLCHRVFKYRKKNKFRVPPNLVILQRDQEECT EAMFKCLDNKFKPIFLKDLNYVFQSPMTKSAKQSYSASNTLLIESDEQLFLFPYEYTADKVSDNELAAFGKLRKYLDELAVADDVPSFVKENPIRKPAIS PTHPDWSFYSKIVYCLRRKEMKSNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	5.7	0.9291
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	8.2	0.9259
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.9	0.9253
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10007770 [exp]	10.2	0.7245
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	11.5	0.9253
					Lus10040397 [exp]	12.8	0.9253
					Lus10006918 [exp]	14.1	0.9253
					Lus10007508 [exp]	15.2	0.9253
AT1G04670			unknown protein		Lus10004041 [exp]	16.2	0.9253
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	17.1	0.7354

Compare expression of checked genes

Lus10019760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.