Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07690 745 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT2G41540 724 / 0 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3) AT5G40610 68 / 4e-12 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016364 [exp] 919 / 0 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10035438 [exp] 763 / 0 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10031052 [exp] 758 / 0 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10022308 [exp] 59 / 4e-09 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 59 / 7e-09 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203800 [exp] 825 / 0 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.006G046900 [exp] 768 / 0 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.016G043400 [exp] 749 / 0 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.017G070900 [exp] 60 / 2e-09 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10019761 pacid=23139246 polypeptide=Lus10019761 locus=Lus10019761.g ID=Lus10019761.BGIv1.0 annot-version=v1.0 ATGACCAAACCAAGCACAATTCCGTTGAGAATTAAATTGAATCTTCCGCCACGTGGTGGCGGTGCCCGGAAGTTCCTTTTCGCAACGCCGAAACCCGCGT CGGCAGCATTGGGACTAACGACAGAATTATCCGCAACAACTAACAAATCGAAGCTTCTCCGTGTCACAAATAAAAAACCCAGAGGCCGACGGAAGAAAGA CGACGACTTGAGTACGTACGCTACCGCATTCGTCACACCCCTTAAACCCTCCGACTTGAATTCCACCGCCGCATTTGCTTATTTAAGCGCAGGAATTGCT TGGTTGGTGCTAAGAATGGTTGAGAATACCGAAGCAGCGGATCATACCGTCTATCCAAACGGAAATGGCGCCGTTCTAGAACAGAAGCTGGACGACCTCC GTCACCTCTTCAACAAAGCAGACGGCGACCCTTTACGTATCGTCGGAGTGGGAGCAGGAGCTTGGGGAAGCGTTTTCACCGCTCTGTTACAAGACAGCTA TGGACATTTGAGAGACAAAGTTCTGATTAGGATATGGAGAAGGCCAGGAAGAGCTGTGGATAGAGCCACTGCAGAGCATCTGTTTGGAGTGATCCATTCG TGGGGGGGTGTGGTGGGGAGATTGGTTAGGGGGTGTGCTTATCTCAAGTATGTGGAAGCTAGGTTGGGTGATAGGATGTTGTATGCGGATGAGATTTTGA AAGATGGGTTTTGCTTGAACATGATTGACACTCCGCTTAGTCCTTTGAAAGTTGTGAGTAACTTGCAGGAGGCTGTGTGGGATGCTGACATTGTTATTAA TGGATTGCCGTCTACTGAAACTAGGGAGGTGTTTGAGGAGATTAGTAGGTTTTGGAAGGAGAGGAGGACGGCTCCGGTGATCATATCTTTGGCTAAGGGT GTGGAAGCCGAGTTAGGGACTGAGCCTCGGATTATAACCCCCACTCAGCTTATCAACCGAGCAACTGGAGTTCCGATTGAGAACATACTTTACCTTGGAG GTCCTAACATTGCATCTGAGATATACCATAAAGAATATGCTAATGCTCGAATCTGTGGGTCGGAGAAGTGGAGAAAACCGCTGGCGAAGTTTCTAAGGCA ACCCCACTTTATAGTTTGGGATAATGGTGATCTTGTTACTCATGAAGTCATGGGCGGGTTGAAGAATGTCTATGCCATTGGAGCTGGAATGGTGGCAGCT CTTACGAACGAGAGCGCAACAAGCAAGTCAGTTTACTTTGCACACTGTACTTCGGAGATGATATTCATCACTCACCTATTGGCAAAGGAGCCAGAGAGGC TTGCGGGGCCCTTGTTGGCCGACACTTACGTTACCTTACTCAAAGGTCGTAATGCATGGTACGGCCAGCAGTTAGCCAAAGGGGTGCTGAGTCTTGAAAT GGGGGACAGCATCAAGGGCAAGGGAATGATTCAGGGTGTCTCTGCTGTAAAAGCATTCTATGAGCTGCTAAGTCAGTCCAGCTTAAGCGTCCTGCATCCT GAGGAGAAGAAGCTTGTGGCTCCGGTCGAGCTTTGCCCCATACTCAAGATGCTATATCGAATTCTAATCATCAGGGAGTTTCCTGCAGAAGCCATTCTTC AAGCACTGAGGGACGAGACTATGAACGACCCGAGAGACCGAATAGAGATTGCTCAAACGCATGTCTTTTACAGGCCATCGCTACTGGGTCAGAATCCATG A
AA sequence Show only first row Show all	>Lus10019761 pacid=23139246 polypeptide=Lus10019761 locus=Lus10019761.g ID=Lus10019761.BGIv1.0 annot-version=v1.0 MTKPSTIPLRIKLNLPPRGGGARKFLFATPKPASAALGLTTELSATTNKSKLLRVTNKKPRGRRKKDDDLSTYATAFVTPLKPSDLNSTAAFAYLSAGIA WLVLRMVENTEAADHTVYPNGNGAVLEQKLDDLRHLFNKADGDPLRIVGVGAGAWGSVFTALLQDSYGHLRDKVLIRIWRRPGRAVDRATAEHLFGVIHS WGGVVGRLVRGCAYLKYVEARLGDRMLYADEILKDGFCLNMIDTPLSPLKVVSNLQEAVWDADIVINGLPSTETREVFEEISRFWKERRTAPVIISLAKG VEAELGTEPRIITPTQLINRATGVPIENILYLGGPNIASEIYHKEYANARICGSEKWRKPLAKFLRQPHFIVWDNGDLVTHEVMGGLKNVYAIGAGMVAA LTNESATSKSVYFAHCTSEMIFITHLLAKEPERLAGPLLADTYVTLLKGRNAWYGQQLAKGVLSLEMGDSIKGKGMIQGVSAVKAFYELLSQSSLSVLHP EEKKLVAPVELCPILKMLYRILIIREFPAEAILQALRDETMNDPRDRIEIAQTHVFYRPSLLGQNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07690			6-phosphogluconate dehydrogena...		Lus10019761 [exp]	0	1
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	25.7	0.5072
AT5G12970			Calcium-dependent lipid-bindin...		Lus10033343 [exp]	48.1	0.4755
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	60.4	0.5257
AT4G16260			Glycosyl hydrolase superfamily...		Lus10027479 [exp]	164.7	0.4440

Compare expression of checked genes

Lus10019761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.