Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 210 / 2e-64 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 199 / 6e-61 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 167 / 1e-48 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 138 / 7e-38 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 126 / 1e-33 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 117 / 3e-30 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 113 / 4e-29 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016363 [exp] 275 / 9e-92 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 258 / 7e-85 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 253 / 4e-82 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10035433 [exp] 211 / 3e-67 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 211 / 9e-67 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10018039 [exp] 201 / 3e-63 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 173 / 9e-52 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10042035 [exp] 172 / 2e-51 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10024289 [exp] 172 / 1e-50 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203600 [exp] 237 / 1e-75 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 234 / 4e-74 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 213 / 6e-66 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 210 / 7e-65 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.002G030500 [exp] 167 / 1e-48 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 167 / 1e-48 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 138 / 7e-38 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 117 / 3e-30 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 115 / 1e-29 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10019762 pacid=23139194 polypeptide=Lus10019762 locus=Lus10019762.g ID=Lus10019762.BGIv1.0 annot-version=v1.0 ATGCTGAAAACCCTTCTTACCAGGAAGGCAGTCTTCATACGGATTGTTACAACTGAATATTGGTTGACTCAGCCGCGAAAAGGGGAGGTACTTAATTGCT CAGAGAAACAGAATGAAGATCTCTTCCACAGCGTTCTTGGAGGACTTGGTCAGTTTGGCATCATAACACGTGCAAGAATATCACTGGAACCAGCACCAGA GATGGTGAAATGGATTAGAGTTCTCTACTCAAACTTCACCACATTTACCAGAGACCAGGAGCATTTAATATCTGCAAGAAGCACATTTGACTATGTTGAA GGATTTGTGATAATCAATAGGACTGGACTCTTGAACAACTGGAGATCATCATTCAATCCTCAAGATCCAGTTCAAGCCAGCCAGTTCAAATCTGATGGAA AAACTCTATACTGCCTGGAACTAGCCAAATATTTTAGGAACAATGAGAGAGATGCAGCACATGAGGACCGAATCCACCAAGTGAAAAAGGCATCAAGCGG GCGGAGGGAATGTAGCCAGCATCTCCACAATGTAAGGCCAGGGGAGAATATTACAGCCATCATCATTGACAAAGAGATTCTCACATTTTTACGCCAAAAA AACCCGCTGAGATGGAGACCCACTGCTACGAAGCGTACAATGCTGTTGGACCATCAAAGCGGCGGAGCCGTCTTAATCCTCGCCGCCTCCCGCCGTGTCT CATCGTCCTAA
AA sequence Show only first row Show all	>Lus10019762 pacid=23139194 polypeptide=Lus10019762 locus=Lus10019762.g ID=Lus10019762.BGIv1.0 annot-version=v1.0 MLKTLLTRKAVFIRIVTTEYWLTQPRKGEVLNCSEKQNEDLFHSVLGGLGQFGIITRARISLEPAPEMVKWIRVLYSNFTTFTRDQEHLISARSTFDYVE GFVIINRTGLLNNWRSSFNPQDPVQASQFKSDGKTLYCLELAKYFRNNERDAAHEDRIHQVKKASSGRRECSQHLHNVRPGENITAIIIDKEILTFLRQK NPLRWRPTATKRTMLLDHQSGGAVLILAASRRVSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10019762 [exp]	0	1
					Lus10032433 [exp]	4.9	0.7988
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	6.5	0.7148
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	10.2	0.7309
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	17.7	0.7239
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	19.0	0.7619
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	19.1	0.6770
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	19.9	0.7437
					Lus10038255 [exp]	26.3	0.7187
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	27.2	0.7406
					Lus10025020 [exp]	32.0	0.6941

Compare expression of checked genes

Lus10019762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.