Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20740 577 / 0 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G18900 150 / 6e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G46100 145 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 147 / 3e-38 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G03560 145 / 1e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 142 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 142 / 9e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 143 / 1e-36 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62720 139 / 2e-36 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16640 138 / 8e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016361 [exp] 782 / 0 AT4G20740 914 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019763 [exp] 140 / 4e-40 AT4G20740 115 / 4e-31 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033110 [exp] 147 / 1e-37 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10005303 [exp] 146 / 1e-37 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 145 / 1e-37 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015397 [exp] 141 / 7e-37 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018567 [exp] 143 / 9e-37 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003427 [exp] 136 / 8e-36 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006373 [exp] 140 / 1e-35 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203100 [exp] 643 / 0 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271200 [exp] 143 / 5e-37 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G066400 [exp] 143 / 2e-36 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.005G046000 [exp] 141 / 5e-36 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 140 / 5e-36 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 137 / 7e-35 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 136 / 1e-34 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G057900 [exp] 134 / 2e-34 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 135 / 7e-34 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G103400 [exp] 134 / 7e-34 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019764 pacid=23139310 polypeptide=Lus10019764 locus=Lus10019764.g ID=Lus10019764.BGIv1.0 annot-version=v1.0 ATGCCACCCAACTCCCCGCCACCGTCCGCTCCACAGAAATTCTACTTCTTCTACGGTCACCGAAAACCCTCTCAGAACCGCCCCGTGGTCCGCGGCGGCG TCTTCACAAACCGCAAACCTTCCAAACCTCCTCCCAACGTCTCTCCCAATAAAAAAACCCCCTTTTCTCCATTCGACATCACAAAATGGGACCCACAACA CCCATCACCTCCGCCACCGCGCTCTCTGGCCGTCTCCGAGCGCCTCTCCCCGATCGCCCGGTTCGTGGTCGACGCCTTCCGTAAGAACGGAAACCACTGG GGCCCACCGGTGGTAGCCGAGCTCCGCAAGCTCCGCCGCCTAACGCCGGAGCTCGTGGCTGAAGTTCTGAAAGTTGAAAGCAACCCTCACTCGGCAACCA AGCTATTCCACTGGGCAGGTAAGCAAAAAGGTTACTACCACAACTTCTCCTCCTACAACGCTTTCGCTTACTGCTTGAATCGAGCTACCTACTACCGTGC TGCGGATCAGCTCCCCGAGCTGATGCAATCTCAGGGCAAACAACCGAGTGAGAAGCAGTTTGAAATTCTGATCAGAATGCATTTGGATGCCAATAGAGGG CTTAGGGTTCACTATGTGTATCAGAAGATGAAGAAATTTGGTGTGAAGCCTCGTGTTTTCTTGTACAATAGAATATTAGATGCTTTGATGAAGAATGGCC ATTTCGATTTGGCTTTGTCTGTGTACGATGATTTCAGGAGTGATGGATTAGTGGAAGAGAGTGTTACTTACATGATTCTGATCAAGGGACTTTGTAAAGC TGGCAGGGTAGCTGACATGAAAGAGGTCTTGAATCGAATGAGGGATAATCTGTGCAAACCGGATGTTTTTGCTTACACAGCAATGGTTAGAGTACTGATC GGGGAAGGGAATTTGGATGGATGTTTACAGGTTTGGGAGGAGATGAAGGCTGATGGAGTTGAGCCGGATGTTATGGCCTATTCGACTGTGGTGACCGGGT TGTGTAAGGGGAAGAGGGTGCAGAAGGGTTATGAGTTGTTTAAAGAGATGAAGGAGAAGAAAGGGGTTTTGATTGATAGAGGGATTTATGGTGTTCTAGT GGATGCATTTGTCGATGATGGGAAAGTTGGTGCAGCTTGTGATCTGTTGAAGGATTTGGTTGATTCGGGGTATAGAGCCGATTTGGGGATATATAATTCG CTTATTCGAGGTCTGTGCAATGTGAAACGGGTTGATAAGGCTTATAAGCTTTTCCAGGTCACTGTACAGGAAGGTCTCGAACCGGGGTCTGGAACCGGAT TTTGGAACTGTGAATCCTATGTTGGCTGCCTTTGCAGAGATGAAAAAGATGGATGA
AA sequence Show only first row Show all	>Lus10019764 pacid=23139310 polypeptide=Lus10019764 locus=Lus10019764.g ID=Lus10019764.BGIv1.0 annot-version=v1.0 MPPNSPPPSAPQKFYFFYGHRKPSQNRPVVRGGVFTNRKPSKPPPNVSPNKKTPFSPFDITKWDPQHPSPPPPRSLAVSERLSPIARFVVDAFRKNGNHW GPPVVAELRKLRRLTPELVAEVLKVESNPHSATKLFHWAGKQKGYYHNFSSYNAFAYCLNRATYYRAADQLPELMQSQGKQPSEKQFEILIRMHLDANRG LRVHYVYQKMKKFGVKPRVFLYNRILDALMKNGHFDLALSVYDDFRSDGLVEESVTYMILIKGLCKAGRVADMKEVLNRMRDNLCKPDVFAYTAMVRVLI GEGNLDGCLQVWEEMKADGVEPDVMAYSTVVTGLCKGKRVQKGYELFKEMKEKKGVLIDRGIYGVLVDAFVDDGKVGAACDLLKDLVDSGYRADLGIYNS LIRGLCNVKRVDKAYKLFQVTVQEGLEPGSGTGFWNCESYVGCLCRDEKDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	0	1
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	4.2	0.8624
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	7.3	0.8696
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10021011 [exp]	8.7	0.8190
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	12.7	0.8376
					Lus10007580 [exp]	16.5	0.8480
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	22.4	0.8408
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	23.9	0.8277
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	26.2	0.8290
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	26.4	0.8145
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10002951 [exp]	28.8	0.8164

Compare expression of checked genes

Lus10019764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.