Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20740 287 / 2e-92 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 87 / 4e-19 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 84 / 4e-18 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 84 / 5e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 83 / 6e-18 RPF2 rna processing factor 2 (.1) AT1G12620 82 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 82 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 81 / 3e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 79 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 79 / 2e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016361 [exp] 453 / 8e-157 AT4G20740 914 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013841 [exp] 85 / 2e-18 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 85 / 3e-18 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008593 [exp] 82 / 2e-17 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036020 [exp] 82 / 2e-17 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 82 / 3e-17 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 81 / 4e-17 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 81 / 5e-17 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 81 / 5e-17 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203100 [exp] 362 / 4e-121 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G123600 [exp] 87 / 3e-19 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 85 / 2e-18 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034300 [exp] 84 / 3e-18 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 84 / 4e-18 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050240 [exp] 84 / 5e-18 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G117600 [exp] 82 / 1e-17 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 81 / 3e-17 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 81 / 3e-17 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 81 / 7e-17 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019765 pacid=23139217 polypeptide=Lus10019765 locus=Lus10019765.g ID=Lus10019765.BGIv1.0 annot-version=v1.0 ATGGAGAGATTAGGGTTTGGAGTTCTTGACGATCTGTCGAAGTTCTTGTCCTGCATGGTTGAGAAGGGCGAGAGGACGATTTTGGCACTCGAAGTGTTTC GGGATCTGAAAGCAAGAGGGTATAGCAGTGTTGAAATGTACAATGTACTTATGGAGGCACTCTTGAAGGATGGCGAGGTGAAAAAGGCATTATCTTTATT CGACGAGATGAAAGATTCGAACTTTGAACCGAATTTGGATAGTTACAGCATTGTGGTTTCATGTTTTGTTGAAGACGGCAAGATCAAGGATGCTTGCCAT TGTCATAATAAGATAATTGAGATGGCATGTGTTCCTTCTGTTGCTGCATATAGTTCTTTAGCTAAGGGGCTATGCAAACTCGGAGAGATCGATGCCGCTA TGATGCTTGTTCGCGATTGTCTTGGCAATGTCGTTAGTGGACCGATGGACTTCAAGTACAGTCTCGCGATTATACACTCGTGTAAATCGGGCGGAGCGGA CATGGTTATGGAAGTTGTTAATGAGATGATGAAGGAAGGTGTGCCTCCCAATGAAATCATATGCTCTGCCGTGATCTTTGGAATGTGCAAGCATGGAACT TTGGAAGCGGCGAGGCAGGTTTTCGCCACTTTGAGGGAGCGCAGGATTCTAACGGAAGCCAAGACCATTGTCTATGACGAGATTTTGATCGATCACATGA AGAGGAAGGCAGCTGACTTGGTGCTCTCGGGGTTGAAGTTTTTCGGGCTGGAGTCGAAACTAAAGGCCAAAGGGAGTACGCTTCTGTCAACTTGA
AA sequence Show only first row Show all	>Lus10019765 pacid=23139217 polypeptide=Lus10019765 locus=Lus10019765.g ID=Lus10019765.BGIv1.0 annot-version=v1.0 MERLGFGVLDDLSKFLSCMVEKGERTILALEVFRDLKARGYSSVEMYNVLMEALLKDGEVKKALSLFDEMKDSNFEPNLDSYSIVVSCFVEDGKIKDACH CHNKIIEMACVPSVAAYSSLAKGLCKLGEIDAAMMLVRDCLGNVVSGPMDFKYSLAIIHSCKSGGADMVMEVVNEMMKEGVPPNEIICSAVIFGMCKHGT LEAARQVFATLRERRILTEAKTIVYDEILIDHMKRKAADLVLSGLKFFGLESKLKAKGSTLLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019765 [exp]	0	1
AT4G19950			unknown protein		Lus10018322 [exp]	8.8	0.8101
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	10.2	0.8140
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	24.0	0.7814
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	26.9	0.7847
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	27.5	0.7383
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	31.1	0.7905
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	34.1	0.7792
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	34.7	0.7242
					Lus10007581 [exp]	41.3	0.7715
AT1G15230			unknown protein		Lus10025791 [exp]	41.4	0.7289

Compare expression of checked genes

Lus10019765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.