Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30890 517 / 1e-179 UBP24 ubiquitin-specific protease 24 (.1.2.3) AT4G24560 112 / 9e-26 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 108 / 2e-24 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G57990 106 / 6e-24 UBP23 ubiquitin-specific protease 23 (.1) AT5G46740 100 / 7e-22 UBP21 ubiquitin-specific protease 21 (.1) AT2G22310 97 / 1e-21 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT3G14400 98 / 2e-21 UBP25 ubiquitin-specific protease 25 (.1) AT2G24640 97 / 3e-21 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G39910 95 / 6e-21 ATUBP3 ubiquitin-specific protease 3 (.1) AT4G17895 96 / 2e-20 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016360 [exp] 1025 / 0 AT4G30890 494 / 7e-170 ubiquitin-specific protease 24 (.1.2.3) Lus10013726 [exp] 118 / 6e-28 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 116 / 3e-27 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10036607 [exp] 114 / 3e-26 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 114 / 3e-26 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10009273 [exp] 105 / 1e-23 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10026918 [exp] 104 / 2e-23 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 104 / 3e-23 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10024043 [exp] 98 / 6e-22 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202800 [exp] 615 / 0 AT4G30890 577 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Potri.011G112800 [exp] 112 / 4e-26 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.002G104800 [exp] 109 / 8e-25 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.011G095200 [exp] 108 / 1e-24 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 107 / 4e-24 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G009500 [exp] 105 / 1e-23 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G394600 [exp] 105 / 1e-23 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.007G093600 [exp] 103 / 1e-23 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G156900 [exp] 103 / 6e-23 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.005G074900 [exp] 97 / 9e-22 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10019766 pacid=23139263 polypeptide=Lus10019766 locus=Lus10019766.g ID=Lus10019766.BGIv1.0 annot-version=v1.0 ATGGGTGATTCGAAATTACTAGTATTTGGCTCATTCACGGAGGATGAGATCAGGGCATTGGGGCAAAAGAAGTCAGCTGAGAAACCTGGAAGTTCTGCGG AGAAGAAAGAAGTTCAGGTTCAATCATCAAAGCCAACGAGTGGGATTTCTTTTGGTGAGTTTAGATGTGAATTGAATAGGGAAGTGGGATCCTCCTCCAA GGGGAAATCTGTTATTCAGAATGGGAACTCAGTTGAGCACAAAGATGTGAAGGTGTTGAATGAAACAAATGAAACGCATGTTCCTGGTAGTCCACAAGAA ACCGGGAAGATTGACGATGATACCAACGTAGTTGCTCTTAGTAATGGTGTGAAGGGCTTGATGAAAGATAGTAGTGGTGGTTCGAGTTCCTTACCTGCAT CTCAGCTTGATAATGGTGCTATAACAAATCCTTGGAACTCAAAATTTCAAGTTCTTGATAATGAGACTGCCGCCCCTGGACATGAGGGAGACATTTCAGT GGTGGATGTGAAGAAGGAGAATGGACAAAAACCACCCAATGGATCTATTGCAACAAGCAAGAGTTTTATACCGCATGGCTTGATTAATTCAGGGAACTTG TGCTTTCTGAATGCCACCCTGCAGGCTCTCTTATCTTGCTCTCCTTTTACTCGGCTATTGCAGGAGCTTAGAAGTCAAGATATTCGTAAGGCTGAATTTC CAACATTAAGTGCTTTCACGGAGCTAGTTTCCAACTGTGAGGTGCCAAGCAATTCAAATGTGAAAATGCACACTGCGGCTCTTGAGACTGGTAGACCATT TCGCCCTGCTATGTTTGAAGTGGTGCTTAAACATTTCACTCCTGATGTTCCAATCAGCATATCAGGGAGGCCGAGGCAGGAAGATGCTCAAGAGTTTTTG AGTTTCATCTTGGACCAAATACACGTTGAGTTGCTCAAGCTTAATGGGCAAACTTCTGGCGGAAGCGATGCCAGATCTTCTCTGGTGTCTTCCAGTGAAG ATGATGGATGGGAAACTGTTGGACCGAAGAACAAGTCTGCAGTAACTAGGACTCAAAGCTTCCTTCCATCTCCATTAACTGATATATTTGGTGGGCAATT AAGAAGTCTGGTGACTGCTAAAGGTAATCAACCCTCTGCTAATGTGGAGCCATTCCTTGTGCTCCACCTTGATATTTGTCACGATGCTGTTTACACCATA GAGAATGCTCTTCGTTTGTTCTCTGTACCTGAAAATCTGGAAGGGTACAGAGCATCAACGACTGGAAAGGCTGGTGTAGTCGCTGCCAGGAAGTCGGCAA AGATACAGACCCTCCCGAAGATAATGATATTGCATGTCAAGCGTTTTAGCTATGGGATTCATGGTAGCACAAAGTTGAACAAGCCCGTGCGCTTCCCTTT AGAATTAACGCTCGGTCGAGAACTCCTTGTATCACCATCTTCTGAGAGCCGAAAATACGAGCTTGTGGCTACAATAACCCATCATGGGAGGGAACCATCA AAGGGTCACTACACTGCAGATGTCCTATATCCAAATCGCCAGTGGCTTCGATTCGACGATGCATCTGTTATGGCTATTGGGATCAACAAGGTGCTTCATG ACCATGCATATGTCTTGTTCTACCAGCGAGCATAG
AA sequence Show only first row Show all	>Lus10019766 pacid=23139263 polypeptide=Lus10019766 locus=Lus10019766.g ID=Lus10019766.BGIv1.0 annot-version=v1.0 MGDSKLLVFGSFTEDEIRALGQKKSAEKPGSSAEKKEVQVQSSKPTSGISFGEFRCELNREVGSSSKGKSVIQNGNSVEHKDVKVLNETNETHVPGSPQE TGKIDDDTNVVALSNGVKGLMKDSSGGSSSLPASQLDNGAITNPWNSKFQVLDNETAAPGHEGDISVVDVKKENGQKPPNGSIATSKSFIPHGLINSGNL CFLNATLQALLSCSPFTRLLQELRSQDIRKAEFPTLSAFTELVSNCEVPSNSNVKMHTAALETGRPFRPAMFEVVLKHFTPDVPISISGRPRQEDAQEFL SFILDQIHVELLKLNGQTSGGSDARSSLVSSSEDDGWETVGPKNKSAVTRTQSFLPSPLTDIFGGQLRSLVTAKGNQPSANVEPFLVLHLDICHDAVYTI ENALRLFSVPENLEGYRASTTGKAGVVAARKSAKIQTLPKIMILHVKRFSYGIHGSTKLNKPVRFPLELTLGRELLVSPSSESRKYELVATITHHGREPS KGHYTADVLYPNRQWLRFDDASVMAIGINKVLHDHAYVLFYQRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	3.0	0.9298
AT5G23300		PYRD	pyrimidine d (.1)		Lus10024096 [exp]	8.7	0.9219
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	10.2	0.9035
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	12.3	0.9282
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	14.1	0.9118
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	14.1	0.9220
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	16.4	0.9209
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	20.4	0.9160
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	22.6	0.9175
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	27.9	0.8826

Compare expression of checked genes

Lus10019766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.