Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41430 91 / 9e-24 LSR1, CID1, ERD15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) AT4G14270 77 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031029 [exp] 94 / 2e-25 AT2G41430 115 / 3e-34 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10035419 [exp] 93 / 7e-25 AT2G41430 113 / 2e-33 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10018018 [exp] 90 / 2e-23 AT2G41430 102 / 8e-29 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10042014 [exp] 89 / 6e-23 AT2G41430 99 / 1e-27 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10040964 [exp] 68 / 7e-15 AT2G41430 69 / 2e-15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10009847 [exp] 59 / 1e-11 AT2G41430 63 / 3e-13 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10016358 [exp] 0 / 1 AT2G41430 83 / 1e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023100 [exp] 141 / 3e-43 AT4G14270 89 / 3e-23 unknown protein Potri.003G202500 [exp] 124 / 2e-36 AT2G41430 81 / 5e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.016G041600 [exp] 95 / 2e-25 AT2G41430 121 / 1e-35 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.006G044600 [exp] 94 / 4e-25 AT2G41430 122 / 3e-36 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.008G074600 [exp] 74 / 2e-17 AT4G14270 66 / 2e-14 unknown protein Potri.010G182800 [exp] 73 / 9e-17 AT4G14270 65 / 6e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10019769 pacid=23139302 polypeptide=Lus10019769 locus=Lus10019769.g ID=Lus10019769.BGIv1.0 annot-version=v1.0 ATGGCGATGGTGTCGGGGCAGAGGTCGGCGCTTAACCCCAACGCGCCGGCATTCGTGCCGGCTGTGTACCAGCGAGTGGAGGATTTCTCACCGGAGTGGT GGGAGCTCGTGAAGAGCTCGACGTGGTTCCGCGATTACTGGCTAAGCGTGAATCCGGAGGGAAGCTTCGACGACGAAATAATCGAGGCTCTACTGCCGGA AGAAATCGACCTGGCGGCGGATATGACGGACACAATAGCTGGAGATGTGAAAAAACCTAGTGTGGAATCCGAGAAATCCAACGCTCTGAACGGACTGATC GTGGACGCAAAGGCGTTACTGAGAGATCTGAATCAGTCGCCGACAAGGTCACCGAAGGGGAAGAGTCCGAGATCGGGAGTGGAACCGGCGAAGTTCCAGA TGAGGCCGGTGGGAACCCGTGTGGGAAGTCCCAGGTCCGGTGGACGCCGGATCCAGCAGCCTCGTTGA
AA sequence Show only first row Show all	>Lus10019769 pacid=23139302 polypeptide=Lus10019769 locus=Lus10019769.g ID=Lus10019769.BGIv1.0 annot-version=v1.0 MAMVSGQRSALNPNAPAFVPAVYQRVEDFSPEWWELVKSSTWFRDYWLSVNPEGSFDDEIIEALLPEEIDLAADMTDTIAGDVKKPSVESEKSNALNGLI VDAKALLRDLNQSPTRSPKGKSPRSGVEPAKFQMRPVGTRVGSPRSGGRRIQQPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	0	1
AT3G15040			Protein of unknown function, D...		Lus10034190 [exp]	2.8	0.8890
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	5.3	0.8603
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	7.1	0.8773
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	8.2	0.8472
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	8.4	0.8554
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	8.8	0.8649
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	11.6	0.8496
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	13.8	0.8667
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	14.1	0.8549
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	14.9	0.8744

Compare expression of checked genes

Lus10019769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.