Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 317 / 4e-100 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 310 / 1e-97 Purple acid phosphatases superfamily protein (.1) AT4G24890 310 / 2e-97 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 218 / 2e-62 Purple acid phosphatases superfamily protein (.1) AT2G03450 215 / 2e-61 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G20500 125 / 7e-31 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT5G34850 116 / 1e-27 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT3G52780 114 / 3e-27 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT1G56360 110 / 2e-25 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G13700 107 / 9e-25 ATPAP23, PAP23 purple acid phosphatase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016356 [exp] 1093 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10039565 [exp] 907 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 869 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 794 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10012144 [exp] 311 / 6e-98 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036904 [exp] 308 / 1e-96 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 306 / 3e-96 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10004661 [exp] 222 / 7e-64 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 221 / 2e-63 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 844 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 834 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 324 / 1e-102 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 315 / 1e-99 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 311 / 1e-97 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 299 / 3e-93 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 284 / 1e-87 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 222 / 5e-64 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.006G063700 [exp] 134 / 9e-34 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.001G423700 [exp] 127 / 1e-31 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10019771 pacid=23139284 polypeptide=Lus10019771 locus=Lus10019771.g ID=Lus10019771.BGIv1.0 annot-version=v1.0 ATGAAGATTCTCATCCTCCTCGTGATCATTACCTTGCATCCCGCGGTAGCTAAGTCTTCACCGGAGAGCCGGATTTCGACCTTGAATGTTCTTAACAGAC GGACTCTGCTTCAATGCTTTGACATTAATCCTTACCTCAACGTAACCGTTGTGAGCTCCGATGGCCGTCCAACGGGCCTCCTCTCCGACGAAGAGTTCGT CAATGTCACGGTCCATGGCTCTCGCATTCCGACCCCGTTCGACTGGGTCGCCATGATCTCTCCCGCCGAATGTCGCAACTGGGTTCGGTTTAAATATTTG GAGGGTTGGTACTTTGAGCAGGCACAGTTCTTGAACAACGATCCCGACTACCTAGGCTGCAAGAACAAAGAGTGCCACAAATACAACGGGACCCAATGCC AAGTGTCCACCTGTCTCGCCACGATAACTTTCCACGTCGTCAACTTCAGAACAGACGTGGAGTTCGTTTTCTTGACCGGTGGGTTCGATGTCCCCTGCAT ATTCGCAAGATCCGGACCCCTGAAATTCGCTAACCCGAACCAGCCCCTCTACGCTCACGTCTCCAGCATCGACTCCTCCGGAACCTCTATGAAGGTAACA TGGGTGAGTGGAAGTGAGGAGTCACAGGAAGTGAAGTATGGAAATGGGCAAATAGCAAAATCGAAAGCCACCACCTTTACTCAAGATGATATGTGTTCCT CTCTCTTACCAAGTCCAGCAAAGGACTTTGGTTGGCATGACCCGGGCTACATCCACTCTGCGGTCTTGACCGGACTCGATCCTTCCACCGCTTCTTCCTA TAAATACGGCAGTGATTCAATGGGGTGGAGTGATGAACTGAAGTTAAAGACACCACCAGCAAGTGGATCAGATGAAGTGAGGTTTGTTGCATATGCTGAT ATGGGGAAAGCCCCTCTTGACCCTTCTGTTGAACACTTCATTCAGCCTGGATCTCTGGCAGTGGTGAAGGCCGTGACCCATGAGGCAGACTCGGGGAACG TAGATTCGATATTCCACCTCGGAGATATAAGCTATGCAACAGGGTTCTTGGTCGAATGGGACTACTTCCTTCACCTTATTAGCCCCATCGCCTCCAAGGT TCCCTACATGACCGCCATAGGAAACCACGATAGGGATTATGTTGGTTCAGGCTCGGTTTATACGACGTCCGATTCAGGTGGGGAATGTGGAGTTCCATAT GAGACATATTTCCCAATGCCAACTTCTGGGAAGGATAAGCCATGGTACTCTATTGAACAAGCAAGCGTTCACTTCACAGTTATCTCAACTGAGCATCCTT TGGCAGATGGCTCTGACCAGCTAGAGTGGATCAAGAGTGACTTGGCATCAGTGGATAGATCCAAAACCCCTTGGCTGGTTTTTGCAGGGCACAGACCAAT GTATTCGTCCTCGAATCCAGAAAGCGTAGATGCAAACTTTGTAACGGCTGTAGAGCCATTGATGAAGCAGTACAGGGTTGATCTGGCACTATTCGGACAT GTCCACAACTACGAAAGGACGTGTTCGGTTTACCAAGGCGAATGCTTGGCGATGCCTAGTAAAGACTCGAATGGTGTGGACATTTATGATCACAGCAACT ACACTGCACCAGTTCAAGCAGTGGTTGGAACTGCTGGTTACAGTTTGGACAAATTCTCTGACACTGCTGGAAAATGGAGTTTGAGGAGGATTTCTGAGTT TGGATACCTTAGAGCTCACGCTACAAAGTCTGATATCAACTTAGAGTTTGTGAATGCAAATACATTGCAGGCAGATGATAGTTTCCGGATAATCAAATCA GCAAACTGA
AA sequence Show only first row Show all	>Lus10019771 pacid=23139284 polypeptide=Lus10019771 locus=Lus10019771.g ID=Lus10019771.BGIv1.0 annot-version=v1.0 MKILILLVIITLHPAVAKSSPESRISTLNVLNRRTLLQCFDINPYLNVTVVSSDGRPTGLLSDEEFVNVTVHGSRIPTPFDWVAMISPAECRNWVRFKYL EGWYFEQAQFLNNDPDYLGCKNKECHKYNGTQCQVSTCLATITFHVVNFRTDVEFVFLTGGFDVPCIFARSGPLKFANPNQPLYAHVSSIDSSGTSMKVT WVSGSEESQEVKYGNGQIAKSKATTFTQDDMCSSLLPSPAKDFGWHDPGYIHSAVLTGLDPSTASSYKYGSDSMGWSDELKLKTPPASGSDEVRFVAYAD MGKAPLDPSVEHFIQPGSLAVVKAVTHEADSGNVDSIFHLGDISYATGFLVEWDYFLHLISPIASKVPYMTAIGNHDRDYVGSGSVYTTSDSGGECGVPY ETYFPMPTSGKDKPWYSIEQASVHFTVISTEHPLADGSDQLEWIKSDLASVDRSKTPWLVFAGHRPMYSSSNPESVDANFVTAVEPLMKQYRVDLALFGH VHNYERTCSVYQGECLAMPSKDSNGVDIYDHSNYTAPVQAVVGTAGYSLDKFSDTAGKWSLRRISEFGYLRAHATKSDINLEFVNANTLQADDSFRIIKS AN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019771 [exp]	0	1
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	3.9	0.9408
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	4.5	0.9328
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	6.2	0.9196
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	8.9	0.9105
AT3G05950			RmlC-like cupins superfamily p...		Lus10029571 [exp]	9.6	0.8777
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	10.6	0.9186
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	17.3	0.9164
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	17.9	0.9062
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	19.8	0.9112
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	23.0	0.9082

Compare expression of checked genes

Lus10019771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.