Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 278 / 3e-81 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 267 / 2e-77 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 267 / 2e-77 Purple acid phosphatases superfamily protein (.1) AT1G13900 201 / 5e-54 Purple acid phosphatases superfamily protein (.1) AT2G03450 199 / 1e-53 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT5G06600 141 / 6e-34 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 140 / 1e-33 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G20500 120 / 9e-29 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G58250 117 / 2e-28 TRAF-like family protein (.1) AT3G52780 117 / 1e-27 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039565 [exp] 917 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 900 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10024179 [exp] 815 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 797 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 356 / 1e-112 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 315 / 2e-97 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10012144 [exp] 275 / 2e-80 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10013548 [exp] 267 / 2e-80 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10036904 [exp] 270 / 2e-78 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 878 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 810 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 281 / 2e-82 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.008G096000 [exp] 280 / 4e-82 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 279 / 1e-81 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 270 / 3e-78 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 254 / 7e-73 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 207 / 3e-56 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G012600 [exp] 149 / 2e-36 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 149 / 4e-36 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10019772 pacid=23139204 polypeptide=Lus10019772 locus=Lus10019772.g ID=Lus10019772.BGIv1.0 annot-version=v1.0 ATGAACATGTACTCCATACTCATGATCATCGTCAATGTTGTCCTCGTATACCCGTCTGGTTCGTCCGCCTATTCGTTGCATCCCGCGGTAGCTCACTCGT TACTCGAGCACCGCAACCACACCGGCATCTCGCCCTTCAGTGTACTCAACAGGAGGTCTCTGGGTCAGTGCCCCGACCCGAATCCTTACCTCAACGTAAC CGTGGGTTCCAAAGGTCCTACTCTCTCGGACGAAGAGTTTGTCTCGGTGACTGTCAGTGGGGTTCTGGTCCCGTCTGAGCTCGACTGGGTCGCCATGATC TCTCCCTCCGATTCTGATGCTGGGTCTTGTCCATTGAAGAAAGTCGAGTATATTCAGACGGGAGACTTTTCTGATCTTCCTCTACTCTGCCACTATCCTG TTAAGGGTCAGTTCGTGAGCAATGATCCTGACTACCTAGGGTGCAAGAACAAGCAGTGCCAAACATCCAGCGGGACCGAGTGCCAGGTGTCCACCTGTAA CGGCACGATAAAATTCCACGTCGTGAATTTTCGGACCGACGTGGAGTTCGTTTTCTTTACGGGCGGGTTCGATGCTCCCTGCATACTCACCAGATCCAGA GCCCTGAAGTTCGCCAATCCAAGCCAGCCCCTCTACGCCCACGTTTCCAGCATCGACTCCTCCGGAACATCCATGAAGTTGACATGGGTGAGTGGAAGTG AGGAATCACAGCAAGTGCAGTATGGAGATGGCCAGACTGCCAAATCAGAAGCCACTACCTTCACTCAAGATGATATGTGCAGCTGTGAGTTCTGTCTTCT TCTAACTCTACCTTTACCAATTTCGTTAGTTGGACGAACCGAACCAAACAACTGGTTCGGTTGTGACAACCGTAAACAGACCATGAATGGCGTGTTTGAT TTTCTTGAGCAGTTTGATCCTGGTGGATCCCACTGGCTCCTCCAGTTCAAAGTCCGGTCCGATTTTCCCTCTGTTATTCCAAGTCCAGCAAAGGACTTTG GTTGGCATGACCCCGGTTACATCCACTCTGCGGTCATGACCGGACTCGATCCCTCTAACACTTATTCGTATAAATACGGGAGTGATTCGGTTGGGTGGAG CAATGAAATAAAGTTGAAGACACCACCAGCAAGTGGAGCAGATGAGGTAAGGTTTCTTGCATATGGTGATATGGGGAAAGCCCCTCTTGACCCTTCTGCT GAACACTACATTCAGCCTGGATCTCTGGCGGTGGTGAAGGCCATGACCGATGAGGTAGACTCGGGGAACGTAGATTTGATCTTCCACATTGGAGATATAA GCTATGCAACAGGGTTCTTGGTTGAATGGGACTACTTCCTTCAGCTTATAAGCCCCATGGCTTCCAAGGTTTCCTACATGACCGCCATAGGGAACCACGA GAGGGATTATGCTGATTCAGGCTCGGTTTATACGACAGCCGACTCCGGCGGGGAATGTGGAGTTCCATATGAGACATACTTCCCAATGCCAACTTCAGAG AAGGATAAGCCATGGTACTCTATTGAACAAGCCAGTGTTCACTTCATAGTCATGTCAACTGAGCATCCCTGGACCGATGGCTCCGAGCAGCTAGAGTGGA TCGAGAGTGACATGGCTTCAGTCGACCGATCCAAAACCCCTTGGTTGGTTTTTGCAGGGCACAGGCCAATGTACTCCTCGTCGAACCCGGAAAGCGCAGA TGAAAACTTTGTAACAGCTGTGGAGCCATTGATGCAGCAGTACAAGGTTGATCTGGCACTATTTGGACATGTCCACAACTACGAAAGGATGTGCTCGGTT TACCAAGGCGAATGCTTGGCGATGCCTACTAAAGACTCGAATGGTGTGGACACTTACGATCACAACAATTACACTGCACCAGTTCAGGCAGTCATTGGGA TGGCTGGTTTCAGTTTGGACAAGTTCTCTGACTCTTTGGATGCTGGAAAATGGAGTTTGAGGAGGATTGCTGAGTTTGGATACCTCAGAGCTCATGCTAC AAAGACTGAGATCAACTTAGAGGCGGCCAAACTCCTTGATTCAGTATATATATGCTTCACACTCTCCCGCTGGATGAGAAGCTTTTACAGATTCGCATCT GTTGCTGGAACCGACTGTAGAAAAATGTCGGGCAAAAAAGATGAGCAGCAGCAGGTCAAGAAAACTGATACCAAGAAATTCACATGGAGGATCGAGAATT TCTCGAAGCTGACGGAAACTATGATCTATTCGGATGCTTTTGTAGTTGGAGGCCGCAAATGGAGGGTTCTTGTTTTCCCAAAGGGAAATAAAGTCGATGA TTTGTCTGTCTATCTGGATTTTGCGGATTCTGCAACGACGCCCTATGGATGGAGTGTGTTCGCTGACTTCATCTTTACACTTGTCTACCAAGATGATGGC ACTTTCTCTGTGAGGAAGGATACCCAACACAATTTCAGTGCTTGGCAGTCTGATTGGGGTTTTACGCATTTTGTTCCGCTCAGTAGCCTTGGTACTAAAG GGTTTCTTGAAGCGATAGCATCAGAAGCTGCTGCTACAGATGAGGTCAAAGTAATCGAAGGGGATCAACCTCCGAAAACTAGCCAAGTTCCATTATCCTC CAACCCCCTTTCATCAGAGCCTCAGTCAAATGGAGACGTAGACAGTTCGTTCTCTGCATCAAGTGTTCAATTAACGACTCATAGCCTGATCGCGGAACTT TCAGCAATGGCTGTTGCCAATCACGACTCTTCTTCATCTGATGTAAACGCTAGTTTGCTTCAACAGCAAAATGAGAAACTACACGGGTTCTTCGATTTTT CACTCGAGTCCCTCTTCCAAACCAAATCGCTGGAAGAAGTGGAGAGCATTGCTCGCGGAAATCTCGCGCTGGAAATTGATTCTCTTCAGAAAACTGTTCT GAAAGACTTGATCTCACGCCTGATCGAGTTCAAGGAGACCATTCCCAGCTCTCTCTCGACGATCGAAACAAGCCTCGCCATCGAGTGGTCTAAAGCACAA ACGACCAAGGATTTGGAGGAGAGGTTGGGTTACAGGAAAGGGAAGCTGATTGTTTTGGAGGCAGAGATTTCTAGACTTGGGGAAGAGGGGTCCAAGCTGG ATGTCCAAATTCAGCAATTAACTACCCGCAGGGCCAAAATTCTGGAAAATGAGAATTCTACTGCTGTTGAACTGGAGAAGGCCAACCAAGAAGCTTCTAA AGAACTGGATGAACTGAAGAAGGAACATGCTGAGAGGGAGGAAGCTTTCGAAAAGCGGATTAGAGCCGTGGAGAAACTTGCTCAGGCTAATGCAAGCTGG AAGCTCTTCAAGAGCTTGGGAAAATGGCGATAG
AA sequence Show only first row Show all	>Lus10019772 pacid=23139204 polypeptide=Lus10019772 locus=Lus10019772.g ID=Lus10019772.BGIv1.0 annot-version=v1.0 MNMYSILMIIVNVVLVYPSGSSAYSLHPAVAHSLLEHRNHTGISPFSVLNRRSLGQCPDPNPYLNVTVGSKGPTLSDEEFVSVTVSGVLVPSELDWVAMI SPSDSDAGSCPLKKVEYIQTGDFSDLPLLCHYPVKGQFVSNDPDYLGCKNKQCQTSSGTECQVSTCNGTIKFHVVNFRTDVEFVFFTGGFDAPCILTRSR ALKFANPSQPLYAHVSSIDSSGTSMKLTWVSGSEESQQVQYGDGQTAKSEATTFTQDDMCSCEFCLLLTLPLPISLVGRTEPNNWFGCDNRKQTMNGVFD FLEQFDPGGSHWLLQFKVRSDFPSVIPSPAKDFGWHDPGYIHSAVMTGLDPSNTYSYKYGSDSVGWSNEIKLKTPPASGADEVRFLAYGDMGKAPLDPSA EHYIQPGSLAVVKAMTDEVDSGNVDLIFHIGDISYATGFLVEWDYFLQLISPMASKVSYMTAIGNHERDYADSGSVYTTADSGGECGVPYETYFPMPTSE KDKPWYSIEQASVHFIVMSTEHPWTDGSEQLEWIESDMASVDRSKTPWLVFAGHRPMYSSSNPESADENFVTAVEPLMQQYKVDLALFGHVHNYERMCSV YQGECLAMPTKDSNGVDTYDHNNYTAPVQAVIGMAGFSLDKFSDSLDAGKWSLRRIAEFGYLRAHATKTEINLEAAKLLDSVYICFTLSRWMRSFYRFAS VAGTDCRKMSGKKDEQQQVKKTDTKKFTWRIENFSKLTETMIYSDAFVVGGRKWRVLVFPKGNKVDDLSVYLDFADSATTPYGWSVFADFIFTLVYQDDG TFSVRKDTQHNFSAWQSDWGFTHFVPLSSLGTKGFLEAIASEAAATDEVKVIEGDQPPKTSQVPLSSNPLSSEPQSNGDVDSSFSASSVQLTTHSLIAEL SAMAVANHDSSSSDVNASLLQQQNEKLHGFFDFSLESLFQTKSLEEVESIARGNLALEIDSLQKTVLKDLISRLIEFKETIPSSLSTIETSLAIEWSKAQ TTKDLEERLGYRKGKLIVLEAEISRLGEEGSKLDVQIQQLTTRRAKILENENSTAVELEKANQEASKELDELKKEHAEREEAFEKRIRAVEKLAQANASW KLFKSLGKWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	0	1
AT1G24095			Putative thiol-disulphide oxid...		Lus10030653 [exp]	1.0	0.7532
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	8.5	0.6577
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	11.3	0.6776
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	19.0	0.7226
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002216 [exp]	26.7	0.6388
AT3G25400			unknown protein		Lus10015730 [exp]	30.7	0.6978
AT4G18220			Drug/metabolite transporter su...		Lus10042836 [exp]	37.1	0.6978
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	39.3	0.6106
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	42.7	0.6880
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10023983 [exp]	50.3	0.6967

Compare expression of checked genes

Lus10019772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.