Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 347 / 4e-118 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 336 / 2e-113 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 332 / 5e-112 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 323 / 1e-108 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G14850 316 / 4e-106 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G30900 305 / 1e-101 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 299 / 2e-99 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G58600 279 / 5e-91 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 245 / 6e-78 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G49340 235 / 3e-73 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024176 [exp] 483 / 4e-171 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 440 / 8e-155 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 424 / 5e-148 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 345 / 1e-117 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 342 / 6e-116 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10002198 [exp] 320 / 1e-107 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10015309 [exp] 318 / 6e-107 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10033617 [exp] 300 / 1e-99 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10009209 [exp] 281 / 2e-92 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023900 [exp] 431 / 5e-151 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 409 / 8e-143 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 409 / 3e-142 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 335 / 2e-113 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 334 / 3e-113 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G064700 [exp] 332 / 4e-112 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 326 / 4e-110 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 323 / 8e-109 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106300 [exp] 317 / 1e-106 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.013G118500 [exp] 305 / 2e-101 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10019774 pacid=23139323 polypeptide=Lus10019774 locus=Lus10019774.g ID=Lus10019774.BGIv1.0 annot-version=v1.0 ATGAGATCCTGTCGTCTCCTTCTCTCCGCCGCCGCCGTCGTCTTATGGACGCTGTCGCGCTCGTTGGTCATAACAAATGCCGGCGGAGGAGCAGTTCAGA GGAGTCATTTTGCCAAGGCAAAACCAAAGCGAGGGCGGTTGACTGCAGGCAGTAACTGCGGCAGTTTGTATGAAGGGAGTTGGGTTTACGATGAATCTTA TCCACCTTATTCTTCATCCTCATGTCCCTTCATTGCCAGCGAATTCGATTGCTTGAAGTTCGGCCGCCCCGATCAGGACTACCTCCGGTACCGATGGCAG CCCGCCGGCGGCTGTTCCTTGCCCGGGTTCGACGGTGAGAAGTTGCTGAGGAGGATGAGAGGGAAGAAGGTGATGTTTGTGGGGGACTCGTTGAGTATGA ATCAGTACAATTCCCTGCTGTGCTTGCTTCATGCTTCTGTCCCTTACTCCAACATCACTCGTGAACCTTTTCACTCTGTCCCAACTGTTACATTCCAGGA CTATGACGTGTCAATAATGTTGTTCACAAGTCATTACTTGGTAGACATAGAGAATGAAGACATGGGTAAGGTGTTGAAGCTTGATTCAATCACCAATGGC GATCTCTGGAAACAGATGGATTTTCTGGTTTTCAACTCTTGGGCCTGGTGGTACAGAACTGGGCCTGTGAAAGGATGGGACTATGTTCAAGATGGGGAAA CCATCAAACAAGACATGAACAGAATGGAGGCCTTCAAGAAAGCCTTGAACACTTGGGCAAAATGGGTTGACTCCGATGTCGATACCGCTAAGACTACGAT TTTCTTTCAGGGCGCGTCTCCTTCTCATTACAATGGCACGAATTGGGGGAAGCCGGGAGTGAAAGACTGTTCTCAAGAGACGGATCCAACCCCGGGATCG AAATTTGTGATTGACGGCACTCTCTCCTTAGCGTTACAAGCACAGGAAGACGCCATCAGAACGATCAAGAACCCGGTTCATTTCCTCAACATAACGGGGC TTTCGCAACTGCGAAAAGACGGGCATCCATTTAAGTACAGTGGGCTTGGGAGGATGGATTGCACCCACTGGTGTATAGCTGGAGTCACAGATACTTGGAA CCAACTTCTCTATGCAAATCTTATAGGTTAA
AA sequence Show only first row Show all	>Lus10019774 pacid=23139323 polypeptide=Lus10019774 locus=Lus10019774.g ID=Lus10019774.BGIv1.0 annot-version=v1.0 MRSCRLLLSAAAVVLWTLSRSLVITNAGGGAVQRSHFAKAKPKRGRLTAGSNCGSLYEGSWVYDESYPPYSSSSCPFIASEFDCLKFGRPDQDYLRYRWQ PAGGCSLPGFDGEKLLRRMRGKKVMFVGDSLSMNQYNSLLCLLHASVPYSNITREPFHSVPTVTFQDYDVSIMLFTSHYLVDIENEDMGKVLKLDSITNG DLWKQMDFLVFNSWAWWYRTGPVKGWDYVQDGETIKQDMNRMEAFKKALNTWAKWVDSDVDTAKTTIFFQGASPSHYNGTNWGKPGVKDCSQETDPTPGS KFVIDGTLSLALQAQEDAIRTIKNPVHFLNITGLSQLRKDGHPFKYSGLGRMDCTHWCIAGVTDTWNQLLYANLIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	1.7	0.9359
AT1G18520		TET11	tetraspanin11 (.1)		Lus10000869 [exp]	3.0	0.8933
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	3.2	0.9013
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	4.0	0.9080
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	4.1	0.8830
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	4.6	0.8775
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	4.9	0.9078
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	7.2	0.8862
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	8.0	0.9078
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	8.5	0.9006

Compare expression of checked genes

Lus10019774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.