Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15750 106 / 5e-28 Essential protein Yae1, N-terminal (.1) AT1G34570 106 / 8e-28 Essential protein Yae1, N-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201500 [exp] 155 / 7e-47 AT3G15750 141 / 5e-42 Essential protein Yae1, N-terminal (.1) Potri.001G024000 [exp] 152 / 1e-45 AT3G15750 137 / 8e-41 Essential protein Yae1, N-terminal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF09811 [flax] [poplar] Yae1_N Essential protein Yae1, N terminal
Representative CDS sequence Show only first row Show all	>Lus10019775 pacid=23139258 polypeptide=Lus10019775 locus=Lus10019775.g ID=Lus10019775.BGIv1.0 annot-version=v1.0 ATGGATGGAAGCATTGCCAAGGAGCTTTACTCGGAAAGTCTGGAGCTTCCGACGTCCAGATTGAGTCATCCTGCGACGCTCACTGGCAATGATGGACTAG ATTCTAGCGTATCTTTCTTTTGTCTGATTAGTGTGTGTAATTTCAGCAGTTCTAGGCGTGTTGTGAAGGCTAAGATCCATTACTATCGATTGATCCATCT TAGTTTTGCATTTGAATGGCTGGCTTCAACTTCTTTACCAAGTGTGAGTTTGTGTGAAGATGATTTGCAGGATGGCGACGATGGATCTTTGTGGGGTGGT TCAGATGACGAATTGGATAAACCGTCTGAATTGGATAGAGAATGGAAGAAGAGACGCGATGAGTTCTATGCAGTTGGGTATCGCGATGGCCTGATTGCAG GGAAAGAAGCAATAGCACAAGAAGGATTCAACGTTGGATTTAAGCAGTCAGTGATCCCAGGATACAACTGGGGCATTGTTAGAGGTGTTAGCTGTGCACT TTCGTCCCTTCCGGAGAGTTTGAAAGAGAAGCTGGTTCAAACAGAGGGGAAGAGGAAGGAGTTCCAGAATCTGCAGGAGTCGGTGAGTTCCATTTCTACA ACGGATGCACTCAAGCTTTATCATCAAGATGTTCTGGCGGAAGAGAAGGAAGCTAGGAAGATTAAACATGATGAGACGAGTTCCGGCGGTGTGGAGCAAC AGGGAGGGAGTAGTTCAAGGACTCTTGGAATGTATGCAGAAGAGCTAAACTCCCTTCTTCTTGATTCTCCAGCAATTGAATCGCACTTTTTGGCGAAGTA G
AA sequence Show only first row Show all	>Lus10019775 pacid=23139258 polypeptide=Lus10019775 locus=Lus10019775.g ID=Lus10019775.BGIv1.0 annot-version=v1.0 MDGSIAKELYSESLELPTSRLSHPATLTGNDGLDSSVSFFCLISVCNFSSSRRVVKAKIHYYRLIHLSFAFEWLASTSLPSVSLCEDDLQDGDDGSLWGG SDDELDKPSELDREWKKRRDEFYAVGYRDGLIAGKEAIAQEGFNVGFKQSVIPGYNWGIVRGVSCALSSLPESLKEKLVQTEGKRKEFQNLQESVSSIST TDALKLYHQDVLAEEKEARKIKHDETSSGGVEQQGGSSSRTLGMYAEELNSLLLDSPAIESHFLAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	12.2	0.6385
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	14.5	0.6699
AT3G52050			5'-3' exonuclease family prote...		Lus10025723 [exp]	16.7	0.6737
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10025970 [exp]	20.2	0.6485
AT4G31980			unknown protein		Lus10024948 [exp]	28.0	0.5971
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	31.2	0.6367
AT1G03260			SNARE associated Golgi protein...		Lus10028016 [exp]	31.7	0.5762
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	32.4	0.6387
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	45.2	0.6362
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	51.4	0.6228

Compare expression of checked genes

Lus10019775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.