Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38780 335 / 4e-111 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016355 [exp] 683 / 0 AT2G38780 374 / 2e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024200 [exp] 352 / 9e-118 AT2G38780 399 / 7e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019776 pacid=23139319 polypeptide=Lus10019776 locus=Lus10019776.g ID=Lus10019776.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCTCCACCTCCACCACTTCAAACACTCCTCCTTCACTTATTCATCTCCTTCCCCTGCTTCTCCTCCGCCCCTCTCCGCCGCTTTCCCCG CCGCCGTCGCCTTCTTCCCCTCCAAGTCCTCTCCTTTCAGACACTCGATTTCCGCTGCCCCTCTTAGTAATGCATCATCATCAGAGGAAGAAGAACCCAC CGTTGACCGAGTGAGGCTCGCTTTCGAGAAGGCCAAAGCGTACAAGCAGAAGAAAGCTGAATTGGCAGCTGCTCAGAATCCGGCTACTACTACTAGTAAT ACTCCTGTTCAGGAGGAAGTGCCCGATCGTGTTAAGGCTGCTCTGGAGAAAGCCAAGGAGTACAAGCAGAACAAAGGTATTCCCGGTGCAGGATTAAAGG TTCGCAATGTGAAGGATCCGGCACTTTCCAAGATTGATTTCGTGGGGCTTGATTTTGGGGACAGGAAAACGGGGAACAGGGTTCCTGCTGGGTTGATGCC TACAGTGGATCTTTACCCAGTAGGGGAGTTGCCTGAAGTGGAGATTATCGTTGGTGATCCTACCAAGTTTACCAAGGATAGGAAACAAGTGAATGATCAG CCATTGGAAGAAGAAGAAAAAGAAGAAGGCAATGATAAAGAGCTTTATAAGCCTAGGGTTTCCACTTGGGGGGTGTATCCCAGGCCTGCAAATATCTCCA AAGCGTATGGTGGTGGGAAGACGATTCGCCCCGGGGATGCACTAGAATCAGAAGAGGAAAGAGAGAAAAAGGAAACACGCACAAAGCAATTGGTTGCAGC ATATAGGAACAGAATCGGCGTAAATATTGATCCGAAGTTGAAATCCGAATGCCAGAAGATCTTGGATGATGGCGACTCTTTGATGGACTCAGGGAATCTC AAAGGAGCAATAACCCTCTATCAAGAGGTTATGGATAAACTACCTTATGCGAGTGAAATTCATGGATTAGCTGCTTTGCAATGGGGTATCTGTCAGGATT CACTTCTTAGGTCGGGTGAGGCACGATCTATGTATGACAAACTTCGGTCTCATCCAGTTCCTAAAGTAAGCAAGAGAGCAAGACAATTCGCGTTCAGTTT CCAGGCCATGGAAATGATGAAGGTAACGAAGTCGAACTTCCCGGTGGAGGTCACTGGGTACAAGGACTACTTTGACGCATTTGTTGAAGATAAGGCAGCA AAGTACACAGCGGCAGAGGATGAATCTGAAGGTGTGTTGAAGCAAGCGCTCCCGTATATATTCTTTCTGGTTTCTCCCATTTTTATAGTGCTTTTCATTG CTGTACAGGGAAAGGGTGTAAATTAG
AA sequence Show only first row Show all	>Lus10019776 pacid=23139319 polypeptide=Lus10019776 locus=Lus10019776.g ID=Lus10019776.BGIv1.0 annot-version=v1.0 MASSLHLHHFKHSSFTYSSPSPASPPPLSAAFPAAVAFFPSKSSPFRHSISAAPLSNASSSEEEEPTVDRVRLAFEKAKAYKQKKAELAAAQNPATTTSN TPVQEEVPDRVKAALEKAKEYKQNKGIPGAGLKVRNVKDPALSKIDFVGLDFGDRKTGNRVPAGLMPTVDLYPVGELPEVEIIVGDPTKFTKDRKQVNDQ PLEEEEKEEGNDKELYKPRVSTWGVYPRPANISKAYGGGKTIRPGDALESEEEREKKETRTKQLVAAYRNRIGVNIDPKLKSECQKILDDGDSLMDSGNL KGAITLYQEVMDKLPYASEIHGLAALQWGICQDSLLRSGEARSMYDKLRSHPVPKVSKRARQFAFSFQAMEMMKVTKSNFPVEVTGYKDYFDAFVEDKAA KYTAAEDESEGVLKQALPYIFFLVSPIFIVLFIAVQGKGVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38780			unknown protein		Lus10019776 [exp]	0	1
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	1.4	0.9179
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	2.0	0.9162
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	2.4	0.8947
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	3.0	0.9064
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	4.5	0.9056
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	4.9	0.8785
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	5.2	0.8872
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	5.5	0.8853
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	6.7	0.8730
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	7.1	0.8978

Compare expression of checked genes

Lus10019776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.