Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38770 2350 / 0 EMB2765 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 120 / 6e-27 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G30100 100 / 6e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 98 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 96 / 2e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 91 / 4e-18 DNA-binding protein, putative (.1) AT1G65810 83 / 1e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52090 77 / 7e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G35970 76 / 2e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 75 / 4e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016352 [exp] 3038 / 0 AT2G38770 2443 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 117 / 4e-26 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 117 / 6e-26 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10042360 [exp] 97 / 2e-20 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10035717 [exp] 98 / 5e-20 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 96 / 2e-19 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 94 / 6e-19 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 93 / 8e-19 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10035776 [exp] 84 / 1e-15 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201200 [exp] 2516 / 0 AT2G38770 2323 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 119 / 1e-26 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 118 / 3e-26 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G024401 [exp] 101 / 3e-25 AT2G38770 89 / 7e-22 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 98 / 4e-20 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 94 / 6e-19 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 92 / 2e-18 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.010G253700 [exp] 91 / 7e-18 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 82 / 3e-15 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 82 / 3e-15 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019778 pacid=23139273 polypeptide=Lus10019778 locus=Lus10019778.g ID=Lus10019778.BGIv1.0 annot-version=v1.0 ATGACTAAGGTCTACGGCACCGGCGCCTACGACTTCAAGCGGCACCGTGTGGCGGAGTACCCGACGGCGGAGCTGTCCAACCCGCTCGCCGACAAGCCAC TAGAGTCCAAGCCCGGAGCTTCTCTCCGGAGCTCCATTACCCTCGCCGAGATACAGCGGGACCGCCTCACCAAGATTGCCGCCGCCAACTGGCTCAAGTC CAGTGGTGGTGCTGTTGCTGGTTCGGAGGAGGAGAAGCAGGTAGGGTTTGATGCCAAGCTTGTGAGGAAGATATATGAGACTGAGCTGAAGGTCAGTGAA GGCACGAGGAAGCCTGTGCCCTTGCAGAGGGTGATGATTTTGGAGGTCAGTCAGTATTTGGAGAACTACCTCTGGCCTAATTTCGATCCGGAGACCGCTA CTTTTGAGCACGTTATGTCCATGATTCTCATGGTCAATGAGAAGTTCCGTGAGAATGTGGCGGCTTGGCTATGTTTCTATGACCGTAAAGAAGCGTTTCA GGGATTTCTCGAGAGGGTTATACGGTTGAAGGAGGGGAGAGATATGAGCATTGCAGAAAAGATAAACTATCTAGTTTTTATGATTAATGCCTTTCAGAGT TTGGAAGACGACATCGTCAGTAAAACAGCCCTAAGACTAGCTAGTCTGCAGTCATGGCATAGTTTGTCATATGGACGATTTCAGATGGAGCTATGTACAA ACCCGGATTTGATCAAGAAATGGAAAAGGATGGTAAAGAGAGATATGAGGGAGGCAGCAAAGCGAGGAGACACTTTTAACCCTTTCGATTCAGTTGAAGT GAAGTTCTCGAGAAATCTTATTGAAGAGTTTCTTGATGTGCTTAGTTCTAAGGTTTTTCCAGCAAATGATGCTGTTATTGAAGACGATGGACTCGGTATT GGGCAAGAACAAGTTGACGATGCTGCAGTACTTTACTGTGAGAGGTTTATGGAATTTCTTATTGACTTGCTGAGCCAACTTCCAACAAGGAGGTATCTGA GGCCTCTAGTTGCCGATGTTGCTGTAGTCTCAAAATGCCATTTGAGTGTCCTTTACAGACACGAAAAGGGGAAGCTCTTTGCTCAACTGGTTGACTTGCT CCAGTTTTATGAGAGGTTTGAGATAAATGATCATCTTGGGACGCAATTGACTGATGATGAAGTTCTCCAAGCTCATTATGACCGCTTTTATGCTTTCCAG CTTCTTGCTTTTAAACAGATACCTAAGTTGCGAGATCTTGCATTGTGCAACATTGGTTCAGTTAATAAGCGTGCTGATTTGTCCAAGAAGTTGGCTGTCC TTTCTTATGAGGAGCTGAAAGACTTGGTTTGCCAAAAGCTCAAACTTGTATCTCACAAAGATCCATGGTCTGCAAGCTCTGACTTCCTTATTGAAGTGAT GGTCTCATATTTTGAGAAACAACAGTCCCAGAAGGAATCTATAAATGCTCTTCCTCTCTACCCAAATGAACAAATTATGTGGGATGAGAGTGTTGTGCCA AGCATCAATTACTCCGGAGAGGGGTGTCTTGCTCTCCCAAAGCTGAATCTACAATTTTTGACGCTGCATGATTATCTTTTGAGAAATTTTAATCTCTTCC GCCTTGAATCAACGTATGAGATCCGCGAAGATATTCAGGAAGCAGTACCTCACCTTCTTCCATATATCAACAATGAGGGAGACACAGCTTTCAGAGGCTG GTCAAGAATGGCTGTGCCAATTAGAGATTTTAGGATCAGTGAGGTCAAACAGCCCAATATTGGTGAAGTCAAGCCTTCTTCTGTAACAGCTCAAGTGACT TACAGCATTTCCAGCTATAGATCTAATATTCGATCAGAGTGGGATTCCCTAAAAGAGCATGATGTTCTGTTTTTGCTTTCTATTCGGCCTTCATTTGAAC CTCTAAGTGCTGAAGAAGCTGAAAAGGCAAGTGTTCCGCAGAGGCTTGGGCTCCAGTATGTACGGGGTTGTGAAGTTATTGAGATCCGAGATGAGCCAGG AATGCTTATGAATGATTTTACTGGAAGAATCAAACGAGATGAGTGGAAACCACCTAAAGGGGAACTAAGAACAGTCACTGTGGCTTTAGATACGGCCCAG TACCATATGGATGCAGCTGGCATTGCTGAAAAAGGCGCAGAAGATGTGTATGGGACATTTAATGTATTGATGAGGAGGAAACCAAAGGAAAACAACTTCA AAGCTATTTTGGAATCTATCAGAGATCTTATGAATGAATACTGTATTGTACCTGACTGGCTGCATAACGTATTTCTGGGTTATGGGAACCCGTCTGCTGC ACAATGGACCAATATGCCAGACCTTCTTGAAACAGTGGATTTCAAGGACACCTTCTTAGATGCAGAACACGTGAAGGAGAGTTTCCCAGATTATCAGGTT TGTTTTGTCAATCAAGAAGGTGCGGAGAGTCCTGAACCAAGACCTCCTTTTCGAATTAGACTTCCCAGAACTTTGAAGGGAAACCCTCATGCACTTCCGG GTAACAAGAAAGCTACTATTGAATCATTGGATGAGGTCAAGATGGCAGATGCAACAAATGAAAAAGAAAGACTCATTGTTGAGACATATATTCCGCCTGA TCCAGGGCCTTATCCCCAGGACCAGCCTAAGCAGAATTCAGTTAGATTTACAGCCACACAGGTTGGAGCAATTATTTCTGGCATACAGCCAGGTCTCACT ATGGTTGTAGGGCCACCTGGAACTGGAAAAACTGATACAGCTGTGCAAATTTTGAATGCAATCTATCATAATTGCCCATCCCAGAGGACGTTGATAATCA CTCATTCGAATCAGGCTCTTAATGACCTCTTTGAGAAGATAATGCAGAGAGATGTCCCTGCAAGGTATCTTCTGCGACTGGGTCAAGGAGAGCAAGAGCT TGCTACTGACCTTGACTTCAGCAGGCAAGGTCGTGTGAATTCCATGCTTGTTCGGCGGTTAGAACTGCTTAGTGAGGTGGAAAGGCTTGCAAGGTCTCTT CAGCTTCCAGAGGATGTAGGCTACACGTGCGAGACTGCTGGATATTTTTGGTTGCTTCATGTGTATTCTCGCTGGGAGCTATTCCTTGCTGCATGCGCAG ATAATAAAGATAAACCAACTTTTGTCCAGGATAGATTTCCCTTCAAGGAATTCTTCTCAAACACCCCTCAGCCAGTGTTTACCGGGCAGTCATTTGAGAG GGACATGCGGGCGGCTAATGGTTGTTTCCGTCATCTTAAGACTGTGTTCCAAGAGCTTGAAGAGTGTCGAGCATTTGAGTTGCTGAAATCAACAGCTGAC AGAGCAAATTATCTCATGACCAAGCAGGCGAAAATAGTCGCTATGACTTGCACTCATGCGGCATTGAAGCGAAGGGATTTCCTTCAGCTAGGTTTCAAGT ATGACAACTTGTTAATGGAAGAAAGTGCCCAGATTTTGGAGATTGAAACCTTCATTCCAATGTTACTCCAGAGGCAGGAGGATGGTTATGCACGGCTTAA GCGTTGCATTCTTATAGGGGATCATCACCAGTTGCCTCCAGTTGTAAAGAACATGGCTTTCCAGAAATACAGTCACATGGACCAGAGCTTGTTTACAAGG TTCGTTCGTCTGGGCATCCCTTATATTGAGCTTAATGCACAAGGTAGAGCCAGGCCAAGCATAGCTCAACTTTACAATTGGAGGTACAGGGATTTAGGAG ACCTTTCTTATGTAAAGGAGGATCCAGTCTATCATAGAGCAAATTCAGGATTTTCATACGACTATCAGTTAATTGACGTTCCTGATTACCGCGGAAAGGG AGAGTCTGCACCATCTCCTTGGTTCTATCAAAACGAGGGAGAGGCTGAATATATTGTCAGTGTCTACATCTACATGCGTTTGCTTGGGTATCCTGCTAGT AAGATTTCCATCTTAACAACTTACAATGGCCAGAAACTTCTGATTCGGGATGTTATCAACAGACGATGTGTTCCATATGATTTCATCGGCCCACCCAGCA AGGTAGCGACAGTTGATAAATTCCAGGGACAGCAAAACGATTTTATCTTGCTCTCGCTTGTCCGAACTCGGTTCGTGGGTCACCTCCGTGATGTTAGAAG ACTAATTGTCGCAATGTCTCGTGCTCGTCTTGGTCTTTATGTGTTCTGCCGCCGATCACTTTTCGAACAATGTTACGAGCTGCAGCCTACATTCCAAACA CTCCTTAAGCGCCCTGACCACCTGGCCCTGAATCTGCATGAGACTTCGTCATACACAGAACGCCCGGTTGAGAACATTGGACAACCTTATCCAGTCAGCG GAGTGGACGAGATGGGTCATATTGTTGTCGACAAAATTAATCAGCTGTATCAGGAAAGAACAATCAGCTACCAGTACCAGCAGCATATGGCTTACACATC CACTGCACCACCGATTGAGAATGGTGCAGAACAAGATATGCCTGATGGCGATGTTCCAGTTCAGAATGGTGCTGAACAAGATATGCCTGATAGCCATCTT CCTGTAGAAGCTGCAGATTCGGATGCCATGGTAACTGATCAAAACCAGGACCTTGCTAATCTTGGCCAATCAGACGAAGCGAAAGACCGGCCAGAGGAAG CCACAGAAATGGACGTTGCTGCCGGCAATCAGAACGGGGACGTAGCTAGCAAGAGTCAGTTGGATGGCCAAGCTGATGGAGAAACAAGAATGGAGGAGTG A
AA sequence Show only first row Show all	>Lus10019778 pacid=23139273 polypeptide=Lus10019778 locus=Lus10019778.g ID=Lus10019778.BGIv1.0 annot-version=v1.0 MTKVYGTGAYDFKRHRVAEYPTAELSNPLADKPLESKPGASLRSSITLAEIQRDRLTKIAAANWLKSSGGAVAGSEEEKQVGFDAKLVRKIYETELKVSE GTRKPVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMVNEKFRENVAAWLCFYDRKEAFQGFLERVIRLKEGRDMSIAEKINYLVFMINAFQS LEDDIVSKTALRLASLQSWHSLSYGRFQMELCTNPDLIKKWKRMVKRDMREAAKRGDTFNPFDSVEVKFSRNLIEEFLDVLSSKVFPANDAVIEDDGLGI GQEQVDDAAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVSKCHLSVLYRHEKGKLFAQLVDLLQFYERFEINDHLGTQLTDDEVLQAHYDRFYAFQ LLAFKQIPKLRDLALCNIGSVNKRADLSKKLAVLSYEELKDLVCQKLKLVSHKDPWSASSDFLIEVMVSYFEKQQSQKESINALPLYPNEQIMWDESVVP SINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLPYINNEGDTAFRGWSRMAVPIRDFRISEVKQPNIGEVKPSSVTAQVT YSISSYRSNIRSEWDSLKEHDVLFLLSIRPSFEPLSAEEAEKASVPQRLGLQYVRGCEVIEIRDEPGMLMNDFTGRIKRDEWKPPKGELRTVTVALDTAQ YHMDAAGIAEKGAEDVYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNVFLGYGNPSAAQWTNMPDLLETVDFKDTFLDAEHVKESFPDYQV CFVNQEGAESPEPRPPFRIRLPRTLKGNPHALPGNKKATIESLDEVKMADATNEKERLIVETYIPPDPGPYPQDQPKQNSVRFTATQVGAIISGIQPGLT MVVGPPGTGKTDTAVQILNAIYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNSMLVRRLELLSEVERLARSL QLPEDVGYTCETAGYFWLLHVYSRWELFLAACADNKDKPTFVQDRFPFKEFFSNTPQPVFTGQSFERDMRAANGCFRHLKTVFQELEECRAFELLKSTAD RANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTR FVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLSYVKEDPVYHRANSGFSYDYQLIDVPDYRGKGESAPSPWFYQNEGEAEYIVSVYIYMRLLGYPAS KISILTTYNGQKLLIRDVINRRCVPYDFIGPPSKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRSLFEQCYELQPTFQT LLKRPDHLALNLHETSSYTERPVENIGQPYPVSGVDEMGHIVVDKINQLYQERTISYQYQQHMAYTSTAPPIENGAEQDMPDGDVPVQNGAEQDMPDSHL PVEAADSDAMVTDQNQDLANLGQSDEAKDRPEEATEMDVAAGNQNGDVASKSQLDGQADGETRMEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	1.0	0.9751
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	1.4	0.9749
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	2.4	0.9530
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	3.2	0.9462
AT5G11560			catalytics (.1)		Lus10022144 [exp]	3.3	0.9442
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	4.0	0.9516
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	4.6	0.9599
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	4.9	0.9574
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	5.0	0.9534
AT1G79150			binding (.1)		Lus10029032 [exp]	5.1	0.9420

Compare expression of checked genes

Lus10019778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.