Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 57 / 1e-10 SPH1 S-protein homologue 1 (.1) AT4G29035 55 / 1e-09 Plant self-incompatibility protein S1 family (.1) AT5G04350 48 / 3e-07 Plant self-incompatibility protein S1 family (.1) AT3G27680 43 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT1G28305 42 / 5e-05 Plant self-incompatibility protein S1 family (.1) AT5G27238 40 / 0.0001 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016351 [exp] 268 / 2e-92 AT4G16295 57 / 1e-10 S-protein homologue 1 (.1) Lus10039546 [exp] 191 / 2e-62 AT4G16295 56 / 3e-10 S-protein homologue 1 (.1) Lus10016350 [exp] 130 / 6e-39 AT2G06090 59 / 1e-11 Plant self-incompatibility protein S1 family (.1) Lus10000682 [exp] 91 / 5e-23 AT4G16295 56 / 4e-10 S-protein homologue 1 (.1) Lus10000683 [exp] 89 / 2e-22 AT4G16295 57 / 5e-11 S-protein homologue 1 (.1) Lus10011897 [exp] 89 / 2e-22 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10021633 [exp] 87 / 1e-21 AT4G29035 57 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10021634 [exp] 86 / 3e-21 AT4G29035 58 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10022826 [exp] 85 / 5e-21 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 75 / 5e-17 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 68 / 1e-14 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199801 [exp] 59 / 4e-11 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 54 / 2e-09 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 50 / 8e-08 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10019779 pacid=23139205 polypeptide=Lus10019779 locus=Lus10019779.g ID=Lus10019779.BGIv1.0 annot-version=v1.0 ATGAAGTGCTCGTCGACCACCGTGGCCGCCTTCTTACCAATCCTCGTCAGCCTCCTCCTGGCGGGGGCCACAGCCTCCTTGACGGAGCTGAACCTGAGGG GCCCACTCCGGGCCTACAAGCAAGTCCACGTCCTCAACGAGCTGACTGGGAACAAGATGATCCACGTGCACTGCCACTCGAGGGACGGCGGGGACACGGG GAACCATGACGTGGTGGTGGGGACGGAGTACATGTGGCGGTTCAGGCCAAACCCACTGGGGTCCACTAGGTGGTCGTGTGACGTCATGACGAGCGACAAC CGCAGGGCTACATTCGACTCGTACTGGGAGGACGTGGCGATGACTAGGAGAGAGTACAGGGGGAACACCTACTGGGTTGCTGAGGAGGACGGTGTCTATC TCAGGCCGATTCAGGGAAATAGAGACGAGATTCATGCCACGTGGGTGCCTACTATGCCTGTGTCGGCGCCAGCTGTACCTTCCCCTCCTGTGACTGTGTC TGCTCCTCCTCCACCTGCTCCTGCTGCTGGTGCTGGCACATCATCCGATGAACATCCTTAA
AA sequence Show only first row Show all	>Lus10019779 pacid=23139205 polypeptide=Lus10019779 locus=Lus10019779.g ID=Lus10019779.BGIv1.0 annot-version=v1.0 MKCSSTTVAAFLPILVSLLLAGATASLTELNLRGPLRAYKQVHVLNELTGNKMIHVHCHSRDGGDTGNHDVVVGTEYMWRFRPNPLGSTRWSCDVMTSDN RRATFDSYWEDVAMTRREYRGNTYWVAEEDGVYLRPIQGNRDEIHATWVPTMPVSAPAVPSPPVTVSAPPPPAPAAGAGTSSDEHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10019779 [exp]	0	1
AT1G63060			unknown protein		Lus10001796 [exp]	4.9	0.6576
AT1G63060			unknown protein		Lus10002567 [exp]	6.9	0.6576
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	12.0	0.5947
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	12.5	0.6112
					Lus10006424 [exp]	12.7	0.4933
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	16.2	0.5931
					Lus10041320 [exp]	17.3	0.6222
					Lus10040835 [exp]	18.3	0.5720
					Lus10013570 [exp]	21.0	0.5510
					Lus10014200 [exp]	24.3	0.5131

Compare expression of checked genes

Lus10019779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.