Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12380 371 / 2e-129 ANNAT8 annexin 8 (.1) AT1G35720 318 / 1e-108 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10230 314 / 8e-107 ANN7, ANNAT7 annexin 7 (.1) AT5G65020 314 / 9e-107 ANNAT2 annexin 2 (.1.2) AT5G10220 304 / 5e-103 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT2G38760 238 / 8e-77 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 196 / 1e-60 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 176 / 9e-53 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008227 [exp] 313 / 2e-106 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 311 / 1e-105 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10024054 [exp] 302 / 3e-102 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 291 / 1e-97 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10041140 [exp] 279 / 6e-93 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 270 / 2e-89 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024174 [exp] 232 / 2e-74 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 229 / 2e-73 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 211 / 6e-66 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G200700 [exp] 447 / 2e-159 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 354 / 9e-123 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.007G092500 [exp] 326 / 2e-111 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 317 / 5e-108 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.002G095600 [exp] 316 / 9e-108 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.001G024800 [exp] 238 / 4e-77 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 206 / 9e-65 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 204 / 6e-64 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 191 / 8e-59 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 185 / 2e-56 AT2G38750 371 / 2e-129 annexin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10019780 pacid=23139239 polypeptide=Lus10019780 locus=Lus10019780.g ID=Lus10019780.BGIv1.0 annot-version=v1.0 ATGGCGACCCTCTCTGCACCTGACCACGTCTCCTTTCTTGAAGATGCTGAATCCATCAAAAAATCCGTCGAAGGATGGGGAACAGATGAGAAGGCACTAG TGTCGATTCTGGCTCACAGAACTGCTGCTCAAAGGAAGCAGATCAAGCAGGCTTACTGGGATCGTTATCAGGAGGATCTCATCAAGCGTTTGGAATCTGA ACTCAGTGGAGATTTCGAGAAAGCTGTGTACAGATGGATGCTGGATCCTGAGGATAGAGATGCTGTGTTGGCCAATGTGGCAATGAGGAAATCACTGGAT TACCATTGCATCGTTGAGCTTTCATCGATTCACTCAGCTGAAGAGTTGCTAGCTGTCAGGAAGGCTTACCAGGCTCGTTACAAGAAATCGCTCGAAGAGG ACTTGGCTGCTCATACCTTTGGTGATTCCAGGAAGCTCCTGGTTGGACTGGTGACTGCTTACAGATATGAAGGGACTGAGATCAATGCCTTGCTGGCAAA GAAAGAAGCTGACATCCTTCAGGATGCTGTGAAGGATAATGCAGCTAATGGTGATGAAGTCATCAGGATTGTCACTACCAGGAGCAAGACTCAGCTCTTG GCTACTTTCAATGCTTACAGAGAACTTTATGGCACCTCCATCACTAAGGCTTTGCAGAACGAGTCTGGTGATGAGTTCAAGAAGCTGCTCCGAACAGCCA TTCGAGGCCTAACAGAACCATACAAGTACTACGAAAAGATTCTGCGGAATGCGATCAACAAGAAAGGGACGGATGAGGATGCACTGACGCGAGTGATCGT GACGAGGGCTGAGAAGGATTTGAAGAATGTGAAGGAGATGTACTACAAGAGGAACAGTGTGAATCTCACTCAAGCTGTGGCTAAGGACACTTCAGGAGAT TACAAGGCTTTCCTGCTTGCCCTGCTGGGAGATGATTAA
AA sequence Show only first row Show all	>Lus10019780 pacid=23139239 polypeptide=Lus10019780 locus=Lus10019780.g ID=Lus10019780.BGIv1.0 annot-version=v1.0 MATLSAPDHVSFLEDAESIKKSVEGWGTDEKALVSILAHRTAAQRKQIKQAYWDRYQEDLIKRLESELSGDFEKAVYRWMLDPEDRDAVLANVAMRKSLD YHCIVELSSIHSAEELLAVRKAYQARYKKSLEEDLAAHTFGDSRKLLVGLVTAYRYEGTEINALLAKKEADILQDAVKDNAANGDEVIRIVTTRSKTQLL ATFNAYRELYGTSITKALQNESGDEFKKLLRTAIRGLTEPYKYYEKILRNAINKKGTDEDALTRVIVTRAEKDLKNVKEMYYKRNSVNLTQAVAKDTSGD YKAFLLALLGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	1.0	0.9467
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	1.4	0.9418
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	4.0	0.9219
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	4.2	0.9407
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	5.3	0.9237
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	7.3	0.9261
AT2G37530			unknown protein		Lus10024416 [exp]	7.7	0.9370
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10021145 [exp]	8.3	0.8813
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10042466 [exp]	9.5	0.9305
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	9.8	0.9149

Compare expression of checked genes

Lus10019780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.