Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35000 407 / 1e-143 APX3 ascorbate peroxidase 3 (.1) AT4G35970 363 / 3e-126 APX5 ascorbate peroxidase 5 (.1) AT1G07890 306 / 1e-104 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 296 / 1e-100 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G08390 231 / 4e-73 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 226 / 2e-70 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 120 / 2e-31 APX6 ascorbate peroxidase 6 (.1) AT4G09010 84 / 3e-18 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT4G17690 84 / 4e-18 Peroxidase superfamily protein (.1) AT5G40150 78 / 4e-16 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014128 [exp] 546 / 0 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 350 / 1e-120 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 317 / 6e-108 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10013537 [exp] 310 / 5e-106 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 307 / 5e-104 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10019906 [exp] 305 / 6e-104 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10025680 [exp] 228 / 2e-71 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 210 / 2e-64 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 130 / 3e-35 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134100 [exp] 427 / 2e-151 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 424 / 3e-150 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 401 / 2e-141 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 316 / 4e-108 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 309 / 1e-105 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.006G132200 [exp] 309 / 1e-105 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G179200 [exp] 230 / 3e-72 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 227 / 2e-71 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G089000 [exp] 121 / 4e-34 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 119 / 7e-31 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10019781 pacid=23164073 polypeptide=Lus10019781 locus=Lus10019781.g ID=Lus10019781.BGIv1.0 annot-version=v1.0 ATGCCCCTCTGCCGAAAAATTCAAGAAGTTCAGCACGGCAAAACTTCAGCACAGGACGATAACTCCCATTCTCGCCCATTTCCACGTTCTCACCCTCACT CTCCTCCATTCCTTCCTCGAGACTCCACAGCCAGAGTGTGCTCTACTCCTCTCACCATGGCTTACCCCATCGTCGATGCCGCTTACCTCAAGGAAGTCGA CAAGGCTCGCCGCGATCTCCGCGCTCTCATCTCCTCCAAGAACTGCGCTCCGATCATGCTGCGCTTGGCTTGGCACGACGCCGGGACGTATGATAAGAAC ACCAAGACCGGTGGACCTAATGGCTCTATTAGGAACGACGAGGAGCTGGCCCACGGTGCTAACAGTGGCTTGAAGATCGCTCTGGATTTCTGCGAGGAAG TGAAGGCCAAGCATCCTAAAATCACTTACGCCGATTTGTTCCAGCTGGCTGGTGTCGTTGCAGTTGAGGTCACTGGAGGTCCAACCATCGATTTTCTCCC TGGCAGGAAGGATTCAAAAATTTCCCTCAAGGAAGGGCGACTTCCGGATGCCAAAAAAGGTTCAATTCATTTGAAGGACGTATTCCATAGGATGGGTCTG TCTGATAAGGATATTGTGGCACTATCAGGAGCCCATACTCTGGGAAGGGCACATTCAAATAGATCAGGCTTTGAAGGCCCATGGACCAAGGAACCACTGA AGTTTGACAATACATACTTCGTGGAACTGCTGAAGGGTGAGACTGAGGGACTACTCAAACTCTCAACTGACAATGCCTTGTTGGATGATCCCGCTTTCCG TCCTTTCGTTGAGCTTTATGCAAAGGACGAAGAAGCATTCTTCAAGGACTACGCTACCGCGCACAAGAAACTCTCGGAACTAGGCTTCTCCCCAGCCTCC AAGGTAACTCAGAAAGACAGCACCGTACTCGCACAGGGAACAGTTGGAATAGTGGTAACTGCGGCAGTTATGTTCTTCAGCTACATGTACGAAGTCCACA GGCGATCCAAGTAG
AA sequence Show only first row Show all	>Lus10019781 pacid=23164073 polypeptide=Lus10019781 locus=Lus10019781.g ID=Lus10019781.BGIv1.0 annot-version=v1.0 MPLCRKIQEVQHGKTSAQDDNSHSRPFPRSHPHSPPFLPRDSTARVCSTPLTMAYPIVDAAYLKEVDKARRDLRALISSKNCAPIMLRLAWHDAGTYDKN TKTGGPNGSIRNDEELAHGANSGLKIALDFCEEVKAKHPKITYADLFQLAGVVAVEVTGGPTIDFLPGRKDSKISLKEGRLPDAKKGSIHLKDVFHRMGL SDKDIVALSGAHTLGRAHSNRSGFEGPWTKEPLKFDNTYFVELLKGETEGLLKLSTDNALLDDPAFRPFVELYAKDEEAFFKDYATAHKKLSELGFSPAS KVTQKDSTVLAQGTVGIVVTAAVMFFSYMYEVHRRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10019781 [exp]	0	1
AT3G53470			unknown protein		Lus10019901 [exp]	8.4	0.8561
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	17.0	0.8488
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	19.8	0.8560
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	19.9	0.8491
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	21.8	0.8529
AT3G53470			unknown protein		Lus10014016 [exp]	22.6	0.8533
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10030421 [exp]	24.8	0.8182
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	30.2	0.8527
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	32.6	0.8499
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	34.1	0.8499

Compare expression of checked genes

Lus10019781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.