Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20990 781 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 774 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 540 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 338 / 7e-114 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 231 / 2e-68 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 211 / 6e-61 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 183 / 3e-51 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 119 / 3e-30 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 97 / 4e-21 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 88 / 2e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014127 [exp] 987 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10017268 [exp] 830 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 820 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005069 [exp] 811 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10027842 [exp] 739 / 0 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 602 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 569 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 533 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 528 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134200 [exp] 870 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 860 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 826 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 795 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 602 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 598 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 240 / 5e-72 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 237 / 5e-71 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 214 / 3e-62 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 173 / 1e-47 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10019782 pacid=23163990 polypeptide=Lus10019782 locus=Lus10019782.g ID=Lus10019782.BGIv1.0 annot-version=v1.0 ATGGGGCTCTTCAGTATGATATTCGGCTTCGTCGGCTTCGGAGTCGGCATTTCCACTGGGCTCGGGGTCGGATACTTCCTCTTCATCTACTTCTCTCCCA CAGCTGTCCAGGATCCTGAAGTTCGTCCACTAGCTGAACAAGATGAAGTTACTCTTCAGCGGATGTTTCCTGAGATCCCTCCCTGGGTTAAAAATCCTGA CTACGAACGCATTGATTGGCTGAACAAGTTCATTGAGTGCATGTGGCCGTACCTAGATAAGGCCATTTGCAAGACGGCATTGGAGATTGCAAAGCCGATA ATCGCTGAACAGATACCAAAGTTCAAGATTGACTCTGTGGAATTCGTTAAGCTAACGCTTGGATCACTACCACCCACTTTTCAAGGGATGAAAGTTTATG TGACTGATGAGAAGGACTTGATAATGGAACCTTGCATCAAGTGGGCAGGCAACCCAGATGTTACCGTTGTTGTTAAAACATTTGGATTGAAAGCTACTGT ACAAGTCGGTTTGATTCTTCTGGTTTTGGATCTGCAAGTTTTTGCTTCTCCTCGGATAACTCTGAAGCCTTTGGTTCCTAGTTTCCCCTGCTTTGCCAAA ATATTTGTGTCACTAATGGAGAAGCCTCATGTTGACTTCGGACTCAAGCTTCTAGGAGCAGATGTTATGGTGATTCCAGGACTGTACAGGCTTGTTCAGG AGATAATTAAAAATCAGGTTGCAAACATGTACCTGTGGCCTAAAACTCTTGAAGTTCAAGTTTTGGATCCTGCAAAAGCAATGAAGCGGCCTGTTGGAAT TCTGCATGTGAAAGTCTTGAGGGCAATGAGGTTGAGAAAGAAAGACCTACTTGGTGCATCAGACCCATATGTGAAACTTAAGCTGACGGAGGATAAAGTT CCATCCAAGAAGACAACAGTAAGGCACAACAACTTGAACCCCGAGTGGAACGAAGAGTTTAGTATGACCGTTAGAGATCCACAGACGCAGGCTTTGGAGC TTAATGTATATGACTGGGAACAGGTAGGCAAACATGACAAGATGGGGATGAATGTGGTTCCTCTGAGAGAGATTCCTCCAGAAGAGACGAAAGTGATGAC TCTTGACCTACTTAAGACAATGGATATAGATGACCCTCAAAATGAAAAATCAAGAGGGCAGGTTGCAGTTGAACTGACTTTTAAGCCATTCAAAGAAGAG GACATGCCAAGTAGTTACAAGGACACGCAAGTTGTGGAGAAGGCGCCTGAGGGAACTCCTGCCGGTGGAGGTTTGCTTGTAGTCATAGTCCATGAAGCTC AAGATGTTGAAGGAAAACATCATACAAATCCGTATGTGCGGATTACTTTCAAGGGCGAGAAGAAAAAAACCAAGCATATTAAGAAGAACAGAGATCCAAG GTGGGAAGAGGAATTCCAGTTCATGTTGACCGAACCTCCCACCAACGAGAAGCTACACGTCGAAGTCTTGAGCAGCTCTAAACGGATGGGCTTGCTTCAT CCAAAGGAAGCTCTGGGTTATGTGGTGATCAATCTAGGAGATGTAGTGAACAACAAGAGAATCAACGAGAAGTACCATCTCATTGACTCCAAGAACGGAA AGATTCAACTCGAGTTGCAGTGGAGAGCCGCTACATAA
AA sequence Show only first row Show all	>Lus10019782 pacid=23163990 polypeptide=Lus10019782 locus=Lus10019782.g ID=Lus10019782.BGIv1.0 annot-version=v1.0 MGLFSMIFGFVGFGVGISTGLGVGYFLFIYFSPTAVQDPEVRPLAEQDEVTLQRMFPEIPPWVKNPDYERIDWLNKFIECMWPYLDKAICKTALEIAKPI IAEQIPKFKIDSVEFVKLTLGSLPPTFQGMKVYVTDEKDLIMEPCIKWAGNPDVTVVVKTFGLKATVQVGLILLVLDLQVFASPRITLKPLVPSFPCFAK IFVSLMEKPHVDFGLKLLGADVMVIPGLYRLVQEIIKNQVANMYLWPKTLEVQVLDPAKAMKRPVGILHVKVLRAMRLRKKDLLGASDPYVKLKLTEDKV PSKKTTVRHNNLNPEWNEEFSMTVRDPQTQALELNVYDWEQVGKHDKMGMNVVPLREIPPEETKVMTLDLLKTMDIDDPQNEKSRGQVAVELTFKPFKEE DMPSSYKDTQVVEKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRITFKGEKKKTKHIKKNRDPRWEEEFQFMLTEPPTNEKLHVEVLSSSKRMGLLH PKEALGYVVINLGDVVNNKRINEKYHLIDSKNGKIQLELQWRAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	0	1
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10026618 [exp]	1.7	0.6925
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	2.0	0.7580
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	3.7	0.6615
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10038335 [exp]	8.8	0.6641
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	11.0	0.6721
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	12.3	0.6744
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	17.0	0.6558
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	22.4	0.6552
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	24.1	0.6482
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	25.8	0.6080

Compare expression of checked genes

Lus10019782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.