Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16730 218 / 1e-66 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 206 / 4e-62 BGAL11 beta-galactosidase 11 (.1) AT4G38590 196 / 4e-58 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 144 / 4e-40 BGAL16 beta-galactosidase 16 (.1) AT4G36360 128 / 2e-34 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 125 / 2e-33 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 125 / 2e-33 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT3G13750 122 / 2e-32 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G20710 101 / 4e-25 BGAL7 beta-galactosidase 7 (.1) AT1G31740 88 / 2e-20 BGAL15 beta-galactosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014126 [exp] 370 / 2e-124 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027843 [exp] 223 / 1e-68 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 216 / 1e-65 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 211 / 4e-64 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 206 / 2e-62 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 206 / 2e-62 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10005070 [exp] 186 / 4e-55 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10028348 [exp] 135 / 7e-37 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 135 / 1e-36 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174800 [exp] 243 / 9e-76 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 238 / 4e-74 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.002G080700 [exp] 145 / 1e-40 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 141 / 6e-39 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.007G018100 [exp] 137 / 2e-37 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.013G105100 [exp] 130 / 3e-35 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G232600 [exp] 130 / 3e-35 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 125 / 2e-33 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 123 / 8e-33 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.006G144500 [exp] 120 / 1e-31 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Lus10019783 pacid=23164076 polypeptide=Lus10019783 locus=Lus10019783.g ID=Lus10019783.BGIv1.0 annot-version=v1.0 ATGACTGGAATGGGAAAAGGAATGGTTTGGATCAATAACAGCATAGGGAGATATTGGATGTCTTACCTTTCTCCCCTTGGACAACCTACCCAATCCGAGT ACCATATTCCACGGTCGTTCCTGAAACGGAGATGGAACCTAATGGTTATATTGGAGGCAGAGGAAGGAGCAAACCCGGAAAAGATCGAGATCCTGACAGT TGATAGAAACACCAGATGTAGCAATATAGCAGAGGACCACATTCCCACAGTGAAGTCATGGGGAAGGCAGCAGGGACAGATCTTGAAATTGGTGGATAAG GTTCAACAAGAAGCTCAATTGAGGTGTCCACTCCATAAGAAGATTGTTTCCATCGATTTCGCCAGTTTCGGAAATCCAAAAGGAACCTGTGGGAGTTATG CCATAGGAAATTGTAGCTCGCCATTGTCCGAATCAATTGTTCACAAGCTCTGCGTTGGGAAGAATGGATGTGATATCCCAGTGGAAAGGAACATTTTCGA CGGGATTCAGGATCATTGTCAGCAGATGCAGAAGAGATTAGCAGTTCAGGTGAAGTGTGGCTAA
AA sequence Show only first row Show all	>Lus10019783 pacid=23164076 polypeptide=Lus10019783 locus=Lus10019783.g ID=Lus10019783.BGIv1.0 annot-version=v1.0 MTGMGKGMVWINNSIGRYWMSYLSPLGQPTQSEYHIPRSFLKRRWNLMVILEAEEGANPEKIEILTVDRNTRCSNIAEDHIPTVKSWGRQQGQILKLVDK VQQEAQLRCPLHKKIVSIDFASFGNPKGTCGSYAIGNCSSPLSESIVHKLCVGKNGCDIPVERNIFDGIQDHCQQMQKRLAVQVKCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	0	1
					Lus10004634 [exp]	1.0	0.9996
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	2.0	0.9959
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	3.0	0.9892
					Lus10001872 [exp]	3.5	0.9831
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	3.9	0.9825
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	6.0	0.9571
					Lus10037837 [exp]	7.7	0.9243
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	8.4	0.9487
					Lus10033284 [exp]	10.5	0.9298
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	10.6	0.9360

Compare expression of checked genes

Lus10019783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.