Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16730 1051 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 1051 / 0 BGAL11 beta-galactosidase 11 (.1) AT4G38590 1007 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 790 / 0 BGAL16 beta-galactosidase 16 (.1) AT4G36360 706 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 701 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G63800 690 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT2G28470 664 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 653 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G26140 617 / 0 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027844 [exp] 1454 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 1443 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 1414 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10014126 [exp] 1055 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027843 [exp] 1001 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005070 [exp] 816 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10033427 [exp] 747 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10028538 [exp] 746 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 724 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174800 [exp] 1277 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 1273 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.002G080700 [exp] 799 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 783 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 765 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.007G018100 [exp] 718 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 717 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G069200 [exp] 696 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.006G144500 [exp] 693 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 689 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10019784 pacid=23164064 polypeptide=Lus10019784 locus=Lus10019784.g ID=Lus10019784.BGIv1.0 annot-version=v1.0 ATGACTTCGTCAGTCATAGCTCGCGAGGAGAAAAAGATTCATAAAGGACAAGCTGTGACATATGATGGTAAATCATTGATCATTAACGGTAAAAGAGAAC TTCTTTTCTCCGGATCCATCCACTATCCTCGTAGCACCCCTGATATGTGGCCAAAGCTGCTTGAAGATGCTAAAAGGGGAGGCATTAATGTGATCCAAAC TTACACATTCTGGAACATCCATGAGCCAGAGGAAGGCAAGTTCAATTTTGAAGGAAGATTTGATGTGATCAAATTCTTTAAGTTGATCGGAGAACATGGC TTGTATGCGACCGTTAGGTTTGGCCCGTTCATCCAAGCCGAATGGAATCACGGAGGACTTCCATATTGGTTGAGAGAGATCCCAAATATCATATTTCGTT CCTATAATGAACCATATAAGCAACACATGGAGAGATTTGTTAGGATGATGGTCGAGAAGCTAAGGGATGCAAACTTGTTTGCAGAACAAGGAGGGCCCAT CATCCTAGCTCAGATTGAGAACGAGTACAATACGGTTCAATTAGCTTACAGAGAGTTGGGGACCAAATATATTCAATGGGCCGGAAACCTTGCTTTGGGA TTCAATGTTGGTGTTCCATGGGTGATGTGCAAGCAACACGACGCTCCTGGTCCGGTGATAAATGCTTGCAATGGGAGGCATTGTGGAGACACATTTGGTG GGCCTAATGCGCCCAACAAGCCTGCATTGTGGACTGAGAATTGGACTGCTCAGTTTAGAGTGTTTGGTGATCCACCATCTCAAAGATCAGTAGAAGACAC TGCATTCGCCGTGGTTCGTTGGTTCTCGAAAAACGGAAGTCTAGTAAATTACTATATGTACCATGGTGGGTCTAACTTTGCTAGAACAGCTGCGTCTTTC GTTACGACTCGATACTATGACGAAGCTCCCCTTGATGAATTCGGTCTCGAAAGAGGGCCAAAATACGGCCATCTCAAGGATGTACACAAGGCTATTAACC TGTGCAAGAGGGCTTTGCTTTGGGGAAGTCCTAGTTCTCAACGACTGAATCCAGATGTCGAGGTCCGAATATATGAGCAACCCGGGACAGACGTATGCGC GGCGTTCTTGACCAACAACCACACTAGGCTTGGTCATACCGCCAACTTTAAGGGGCAGAAATACTATCTTCCTCCACGCTCCATCAGCGTCCTTCCTGAT TGCAAAACAGTGGTCTTGAACACTGCAACAATCGTAGCGCAGCATAATTCAAGGAACTTCTTGAAATCCCAAGTGGCAAACAAGCTTGACTGGAAGATGA TCACAGAGACCATTCCATCTGATCTCAACGTGACATCCGCAACTCCAATGGAGCTATATTTCTTGACCAAGGACAAGACCGACTATGCGTGGTACACAAC GACCATCAACTTGGATCCGAGAGACTTGTCGATGAGAAAAGACATTCTCCCTGTTCTGAGGGTTGCAAGTCTTGGTCATGCCATGCTTGCTTTCAACAAT GGCCAGTTTATAGGGTCTGCACACGGAAGCCAGATAGATAAGAGCTTTGTTCTCCAGAAGTCTATTGAATTGAAGCCCGGAATCAACAAGATTTCCTTAT TGGGTACCTTGGTTGGACTTCCTGACAGCGGAGCGTACATGGAGCACAGGTTTGCAGGACCACGAGGCGTGTCGATCCTGGGGATGAACACAGGAACACT TGATCTGTCTCAGAATGGCTGGGGTCACCAGGCTGGACTGAAGGGTGAGCATGATGAACTGTTTACTAAAGAAGGTGCAAAGAAAGCCAAATGGAATAAC ATTCCTAAAGGTGGCAAAGGACCTCCCCTCACCTGGTACAAGGCTAAGTTTGATGCACCAGAAGGAAACGACCCAGTTGCAGTGAGCATGTATGGGATGA TAAAGGGTATGATTTGGATCAATGGAGAGTCGATTGGGCGTTATTGGATGTCATATGTATCCCCACTTGGTGAATCCACTCAAGCCGAGTACCACATCCC GAGATCATATTTGAAGCCCAAGGACAACCTGATCGTGGTGTTGGAGGAAGAGTCGGCGCACCCGAGGAACATTACGATCATGACGGTGAACAGGGACACC ATCTGCAGCGACGTCTCCGAGATGAGCCCACCGAGCGTGAGACAGTGGGAGAGGAAAGACGATAAGTTCAGGCCAGTTGGAACGGAGGTCAAGCTAGCAG CTCACCTGAGATGCCCCCACGGAAAGAAGATCGCCGTCGTGGATTTCGCCAGCTACGGCGATCCTTACGGCGCTTGCGGAGGGTTCGCTCAGGGGCGGTG CCATTCCCCTGTCTCCAAGCAAGTCGTTGAACAGCAATGTCTGGGGAAGGATTCGTGCGATGTCCCATTGGAGAAGGGGCTTTTCAACAAGAATGGAGAC CTTTGCCCTGAAGTGAAGAAGACATTGTCGGTTCAGGTGACCTGCAGGTAG
AA sequence Show only first row Show all	>Lus10019784 pacid=23164064 polypeptide=Lus10019784 locus=Lus10019784.g ID=Lus10019784.BGIv1.0 annot-version=v1.0 MTSSVIAREEKKIHKGQAVTYDGKSLIINGKRELLFSGSIHYPRSTPDMWPKLLEDAKRGGINVIQTYTFWNIHEPEEGKFNFEGRFDVIKFFKLIGEHG LYATVRFGPFIQAEWNHGGLPYWLREIPNIIFRSYNEPYKQHMERFVRMMVEKLRDANLFAEQGGPIILAQIENEYNTVQLAYRELGTKYIQWAGNLALG FNVGVPWVMCKQHDAPGPVINACNGRHCGDTFGGPNAPNKPALWTENWTAQFRVFGDPPSQRSVEDTAFAVVRWFSKNGSLVNYYMYHGGSNFARTAASF VTTRYYDEAPLDEFGLERGPKYGHLKDVHKAINLCKRALLWGSPSSQRLNPDVEVRIYEQPGTDVCAAFLTNNHTRLGHTANFKGQKYYLPPRSISVLPD CKTVVLNTATIVAQHNSRNFLKSQVANKLDWKMITETIPSDLNVTSATPMELYFLTKDKTDYAWYTTTINLDPRDLSMRKDILPVLRVASLGHAMLAFNN GQFIGSAHGSQIDKSFVLQKSIELKPGINKISLLGTLVGLPDSGAYMEHRFAGPRGVSILGMNTGTLDLSQNGWGHQAGLKGEHDELFTKEGAKKAKWNN IPKGGKGPPLTWYKAKFDAPEGNDPVAVSMYGMIKGMIWINGESIGRYWMSYVSPLGESTQAEYHIPRSYLKPKDNLIVVLEEESAHPRNITIMTVNRDT ICSDVSEMSPPSVRQWERKDDKFRPVGTEVKLAAHLRCPHGKKIAVVDFASYGDPYGACGGFAQGRCHSPVSKQVVEQQCLGKDSCDVPLEKGLFNKNGD LCPEVKKTLSVQVTCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019784 [exp]	0	1
AT3G02280			Flavodoxin family protein (.1)		Lus10033550 [exp]	1.0	0.6555
AT2G43620			Chitinase family protein (.1)		Lus10020338 [exp]	24.4	0.4948
					Lus10029472 [exp]	29.5	0.5290
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	86.8	0.4842
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	153.2	0.4545
AT3G14040			Pectin lyase-like superfamily ...		Lus10038316 [exp]	218.3	0.4233
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10026686 [exp]	241.1	0.4170

Compare expression of checked genes

Lus10019784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.