Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20980 382 / 5e-131 MCM10 minichromosome maintenance 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014124 [exp] 733 / 0 AT2G20980 378 / 1e-129 minichromosome maintenance 10 (.1) Lus10005072 [exp] 348 / 8e-117 AT4G27960 291 / 3e-98 ubiquitin conjugating enzyme 9 (.1.2) Lus10027845 [exp] 107 / 7e-28 AT2G20980 61 / 2e-11 minichromosome maintenance 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134500 [exp] 500 / 3e-177 AT2G20980 457 / 2e-160 minichromosome maintenance 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09329 [flax] [poplar] zf-primase Primase zinc finger
Representative CDS sequence Show only first row Show all	>Lus10019785 pacid=23163972 polypeptide=Lus10019785 locus=Lus10019785.g ID=Lus10019785.BGIv1.0 annot-version=v1.0 ATGTCAACTCACCAAGACGATCTCGATCTGCTTCTCTCTCTCGAGGACCGAGTTAACGAAACTCCTCCAGGTTCCCCGTCCTTTGATTACCCAGGGTTTC TATCGGATAATGATGGGTCTCCCAGACGAAAAGGAAAGGCGGCTGATTTATCAGTGTTTAAGGACGCGGTTCGAGATTGCCTCGATTACGACATAACCAA ACTAGTTGAAAAGTCCAGGAAGTCAAATCAGCTGTCGAAGAAATCGAGTGAAGTGAGAGTGGAGAAGCACTCCGGTTTAAGAATCAGTAATCAACCATGC ACACCCGCGGAGCTCGCTGAACGCTTCTCAGGAATTCGTTTCGTTCGGTTGCCTACTATCAAGAGTTCATTGGTGGGGGGCAGTATGTCGGGTTCTTGGG CGACTGTTGGAGTATTGACTGAGAAGGGGAATCCTAGGACTAGCTCTGTTGGCAAAAGCTATTCCATATGGAAATTAAGTTGTTTAGATGAAAACACTGT TTCGGTGTTCATGTTTGGTGATGCGTACAAGCTGAACAGTGGGGAGGAGGCTGGAACCGCGTTCGGGTTGTTTAATTGTGCTATACGGAAAGATAATATG GGATCAGGTTTTTCTTTGAGTGTTTTCTCTCCGAATCAGATATTGAAGATGGGCACGTCGGTCGATTATGGCGTTTGCAAGGGCAAGAGGAAGGATGGAA TTGCTTGTAGCCTAATTGTTAATAAGCGTAAAGGGATCTACTGCAAACACCATAATGTCAATTCAGCTTCCACAATGCGTACCGAGCTAAAGGGAGGGAA CTTCAGCACAGCCTTTAGGACTCCGATCAACCGGCAAGGTATTTACATGGTTGATCCTCTAGCTGACAAGAAAAACCTACAAAAGCAACAGCCAATCAAG TTACTGTCTGTAGAAGGGCTCAGAAAGGCATTGAGTAATGGAGAAAAAGTGACTACTAATACACACTCGCAAGGAATGAGATTTCTGAACGAGGTCGCAG GAAAGTTGTACTCTAAGAATTCAAGTACAGCAATCCAACACATCACTAGCTTGGACAAAAGGAAACTACAAAGCATGAAAGCTAATCCACCAACAGCAGT GCATGATGTCGCGAAACGGATGAAAACTAGTCAGGATCATCAGTCTTCTGTCAACAAGGCCAAGCAGGGGACCGAGAAGATGATTGAGTTGGACCTCATT GACTCGGATGAAGAATCGTGA
AA sequence Show only first row Show all	>Lus10019785 pacid=23163972 polypeptide=Lus10019785 locus=Lus10019785.g ID=Lus10019785.BGIv1.0 annot-version=v1.0 MSTHQDDLDLLLSLEDRVNETPPGSPSFDYPGFLSDNDGSPRRKGKAADLSVFKDAVRDCLDYDITKLVEKSRKSNQLSKKSSEVRVEKHSGLRISNQPC TPAELAERFSGIRFVRLPTIKSSLVGGSMSGSWATVGVLTEKGNPRTSSVGKSYSIWKLSCLDENTVSVFMFGDAYKLNSGEEAGTAFGLFNCAIRKDNM GSGFSLSVFSPNQILKMGTSVDYGVCKGKRKDGIACSLIVNKRKGIYCKHHNVNSASTMRTELKGGNFSTAFRTPINRQGIYMVDPLADKKNLQKQQPIK LLSVEGLRKALSNGEKVTTNTHSQGMRFLNEVAGKLYSKNSSTAIQHITSLDKRKLQSMKANPPTAVHDVAKRMKTSQDHQSSVNKAKQGTEKMIELDLI DSDEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	0	1
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	2.4	0.9269
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	4.6	0.8842
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	5.5	0.9034
AT4G16807			unknown protein		Lus10010996 [exp]	5.5	0.9013
AT5G02610			Ribosomal L29 family protein ...		Lus10024437 [exp]	9.8	0.8541
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	10.4	0.9006
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	12.4	0.8793
AT3G60660			unknown protein		Lus10010359 [exp]	15.5	0.8797
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	16.3	0.8947
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	16.6	0.8874

Compare expression of checked genes

Lus10019785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.