Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16750 498 / 3e-169 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 419 / 8e-141 Protein kinase superfamily protein (.1.2.3) AT5G63940 378 / 9e-122 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 362 / 2e-114 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 334 / 2e-104 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G18910 236 / 6e-70 Protein kinase superfamily protein (.1) AT3G05140 231 / 1e-68 RBK2 ROP binding protein kinases 2 (.1) AT5G57670 233 / 5e-68 Protein kinase superfamily protein (.2) AT5G56790 234 / 9e-68 Protein kinase superfamily protein (.1) AT1G55200 234 / 1e-67 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014122 [exp] 1182 / 0 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 466 / 5e-155 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 459 / 1e-152 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 399 / 9e-130 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 381 / 2e-123 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 309 / 1e-97 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 305 / 1e-94 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10025103 [exp] 248 / 4e-74 AT2G16750 238 / 7e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10029151 [exp] 239 / 9e-72 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175100 [exp] 722 / 0 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 681 / 0 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 435 / 2e-143 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 426 / 5e-140 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 368 / 3e-117 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 365 / 1e-115 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.002G077900 [exp] 345 / 2e-108 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G096100 [exp] 275 / 1e-83 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 273 / 5e-83 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.007G011700 [exp] 242 / 1e-72 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019787 pacid=23163985 polypeptide=Lus10019787 locus=Lus10019787.g ID=Lus10019787.BGIv1.0 annot-version=v1.0 ATGACGATTGAGGAGGTAACCCAGAAGAGAAATGTGATGGTTGGGATTAAATTCGACAGTTGCAGCAGAGAACTCCTGGGTTGGGCTGTGTTCAAGGTTG CTGACCCTGGAGATTCTGTTGTTGCTGTTCATGTCCGCCGAAATTCTGGAATTGCTCCGAGAGGGAAGCTATTGTTGGATAGTCATATACAAACTTACCA GAGTATATGTTCATTCAAGAAGGTGGATCTCACAGGCCAAATCTCTACAGGGAATTCGGTTAAGAGAAGTTTGGTAAGAGAAGCCAAGAACCATTCTTCT GCTGTTCTAATTCTGGGGATCAGCAATCCAAATGCTCTCTGGGGTTGGAATTCCATGGCTAGATATTGCAGCAAGCGTCTTCCACCAACTACTGATGTTC TAGCCATCCACAATGGCAGAATAGTCTTCAGAAGGTTCAACAGTTCTCAACTACTAGAGGGAAGAACAAGACATGGAGACCTGAAACCGAGTCTGAGCCT GACGTCAAGTCCTATATCCCCGTCCGAATTTGGTGATTCGGAGTTGGACAGCGTAAGATCGAGCTTCGAAGTGCTGACAGAAAGTGGAAGTGGGGATTCA AAAGATGAGATTATAAAGAGGGGAAAGCGATCCGATTCGTGTTTAGCTCTAGATCAGAAGCCTGGCTGGCCTCTTCTTAGGAGAGCAACTGCTGCTGATG CTGGTCATACAAGGGAGTTGTCTGTAGTACAGTGGGCACTCAGCTTACCAAACCGCTTCGAAAACCGACTGGAAAGCTTAACAGAAGAGCTGAAAGGTGA GGCAATGGGTGAAATAGGGAATAGATTGGAGATTTTGCTGCAGGGATTAAATTCATCTAGCTGCTGCAAATGGTTGAGCTATGAGCTTCTGGAGACTGCA ACTTGCAAATTTCATTCAGAAAATTTGATTGGGAAAGGAGGATGGAATCAGGTGTACAAGGGGACTCTCCAAGATGGAAAGCTGGTAGCAGTGAAGATTC GAAAGTCATCATCGCCAGAAGTAAGAAAGGATTTCGTTCAGGAACTCGAGATCATCTCCTCACTGGAACACAACAACATCACGCCTCTTGTAGGGATATG CATCAGAGACTTTGATCTCATATCTGTTTATCACTTCTTACCAAAGGGAAGCCTAGAGGAAAACCTGCACGGCAAGAACAAAGAGAAATCTCGATTGTCA TGGGATGTGAGATTCAGAATCGCTGTTAAAATTGCAGAAGCATTGAACTACCTTCACCATGAAGCTTCTAGGCCTGTAATCCACAGGGATGTCAAGTCTG CAAACATTCTCCTAACAGATGGATTGGACCCACAGCTATCTGATTTTGGGCTTGCAATCTGGGGACCTACAGCTTCATCTTTTGTTACTCAACCAGATGT AGTGGGAACCTTTGGATATCTCGCACCGGAATACTTCATGTATGGGAAACTCAGTGACAAGATCGATGTGTATTCTTTTGGTGTGGTTCTGCTCGAACTG ATAACAGGCAGAGAAGCAATCATCAGTTCAGAGAATTCCAAGGCTCAGTTGAGCTTGGTCATGTGGGCAAATCAGATACTAGAGTGTGGGAATTCAAAAG ACCTCCTGGATCCACGTCTGAATGGGGAGTTCGACGAGGTCCAGTTTCGGAGGATGGTCGTTGCTGCAAAGCTATGCACTACTCGTGCAACCAGCATACG TCCTAAGATGAGCGAGGTACTAAGGCTACTTGGAGAGGAAGCATACTTTGCAAAATGTGTGATTCCGCAACAGAAAGACCAAGCAGATGCAGATGCTGAT GCTGAGAATGAGGAAGACAGTTATGACGATGAAGTTTATCCAGAGTCTCGTCCACACCTTCATCTCAACCTAGCATTCCTCGACGTTGAGGATACCGACT CTACCGACTCTACGTCCCATTCAGACCAAGGAAGCTGTGTCACTTGGGAGGATTACTTAAAGGGCAGATGGAGCAGGTCATCAAGCTTCAATCAGTAG
AA sequence Show only first row Show all	>Lus10019787 pacid=23163985 polypeptide=Lus10019787 locus=Lus10019787.g ID=Lus10019787.BGIv1.0 annot-version=v1.0 MTIEEVTQKRNVMVGIKFDSCSRELLGWAVFKVADPGDSVVAVHVRRNSGIAPRGKLLLDSHIQTYQSICSFKKVDLTGQISTGNSVKRSLVREAKNHSS AVLILGISNPNALWGWNSMARYCSKRLPPTTDVLAIHNGRIVFRRFNSSQLLEGRTRHGDLKPSLSLTSSPISPSEFGDSELDSVRSSFEVLTESGSGDS KDEIIKRGKRSDSCLALDQKPGWPLLRRATAADAGHTRELSVVQWALSLPNRFENRLESLTEELKGEAMGEIGNRLEILLQGLNSSSCCKWLSYELLETA TCKFHSENLIGKGGWNQVYKGTLQDGKLVAVKIRKSSSPEVRKDFVQELEIISSLEHNNITPLVGICIRDFDLISVYHFLPKGSLEENLHGKNKEKSRLS WDVRFRIAVKIAEALNYLHHEASRPVIHRDVKSANILLTDGLDPQLSDFGLAIWGPTASSFVTQPDVVGTFGYLAPEYFMYGKLSDKIDVYSFGVVLLEL ITGREAIISSENSKAQLSLVMWANQILECGNSKDLLDPRLNGEFDEVQFRRMVVAAKLCTTRATSIRPKMSEVLRLLGEEAYFAKCVIPQQKDQADADAD AENEEDSYDDEVYPESRPHLHLNLAFLDVEDTDSTDSTSHSDQGSCVTWEDYLKGRWSRSSSFNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	2.4	0.9648
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	2.8	0.9617
AT3G07425			unknown protein		Lus10009587 [exp]	3.5	0.9485
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	5.5	0.9516
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	7.1	0.9394
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	7.9	0.9394
					Lus10017269 [exp]	8.7	0.9308
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	8.8	0.9380
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	9.2	0.9360
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	9.4	0.9418

Compare expression of checked genes

Lus10019787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.