Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 209 / 5e-68 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 195 / 2e-62 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 110 / 7e-30 bZIP ATBZIP24 basic leucine zipper 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014121 [exp] 315 / 2e-110 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027847 [exp] 268 / 9e-91 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 268 / 3e-90 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 87 / 2e-21 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175200 [exp] 223 / 3e-73 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G134900 [exp] 214 / 6e-70 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 94 / 2e-23 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 81 / 2e-18 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019788 pacid=23164087 polypeptide=Lus10019788 locus=Lus10019788.g ID=Lus10019788.BGIv1.0 annot-version=v1.0 ATGGACGACGGAGAGGTTGATTTCTCGCACCAAGAAGTGTTCCCGGAGATTCCGAGCAGCGCATCAATGGACACATTCTTCGACGATATGCTGAAAGACA CTCACGCATGTACACACACCCACACCTGCAATCCGCCGGGTCCGGACTACTCCCACATCCACACTTGCTTCCACGTCCACACCAAAATCGAAGAGAAGAA GGCGAGGACTGCTTCTTTGGAGGATGAAGTTGTGAGGTTGAAGGCCCTGAACCAGCAACTGATGAAGAGGGTTCAAGAACAGGCTGCATTGGAGGCGGAG ATTGCGAGACTCAAGTGTTTGCTTGTCGATATTCGAGGCAGGATCGCAGGGGAGATTGGTTCGTTTCCGTATCAGAAACCTGCTCCTGGTGCTAATGTGA ATTGGAGTGGCTTTAGTGGGCTTGGTGGTGGTGGTGCTTATGTTGTCAACCGGTGTGATATGCAGAGTAGTGATCAGGTTTATACTGATTGTGACTTTGA GAATCTTCAATGTATGATGAATCAACAGTCGGGAACTAAGGATTTTCCTGTCAGTGAAATTGAGAACTCTGTCGCCAATGGAAGTTATCCTGGCTCAAGC AAAAGGAGTGATTTGATTGTTCTACTTTAG
AA sequence Show only first row Show all	>Lus10019788 pacid=23164087 polypeptide=Lus10019788 locus=Lus10019788.g ID=Lus10019788.BGIv1.0 annot-version=v1.0 MDDGEVDFSHQEVFPEIPSSASMDTFFDDMLKDTHACTHTHTCNPPGPDYSHIHTCFHVHTKIEEKKARTASLEDEVVRLKALNQQLMKRVQEQAALEAE IARLKCLLVDIRGRIAGEIGSFPYQKPAPGANVNWSGFSGLGGGGAYVVNRCDMQSSDQVYTDCDFENLQCMMNQQSGTKDFPVSEIENSVANGSYPGSS KRSDLIVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	0	1
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	1.7	0.8956
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	3.6	0.8698
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	14.0	0.8454
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	15.8	0.8885
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	16.1	0.8899
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	23.3	0.8521
AT4G24110			unknown protein		Lus10001676 [exp]	24.9	0.8825
AT3G05550			Hypoxia-responsive family prot...		Lus10033002 [exp]	27.2	0.8815
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	30.2	0.8785
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	30.2	0.8692

Compare expression of checked genes

Lus10019788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.