Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68000 355 / 1e-125 ATPIS1 phosphatidylinositol synthase 1 (.1) AT4G38570 334 / 2e-117 PIS2 probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (.1.2) AT3G55030 40 / 0.0006 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014117 [exp] 329 / 4e-116 AT1G68000 256 / 2e-87 phosphatidylinositol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175600 [exp] 402 / 4e-144 AT1G68000 358 / 7e-127 phosphatidylinositol synthase 1 (.1) Potri.009G135500 [exp] 392 / 4e-140 AT1G68000 340 / 6e-120 phosphatidylinositol synthase 1 (.1) Potri.010G214900 [exp] 40 / 0.0008 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019791 pacid=23164024 polypeptide=Lus10019791 locus=Lus10019791.g ID=Lus10019791.BGIv1.0 annot-version=v1.0 ATGGCTATGAACAACAAGTCTAGACCCAAGAAACCCTCCAAATTGTCCGTCTACCTTTATATCCCCAATATAATTGGGTATGTGCGGGTTCTTATGAACA TTTATGCTTTTGCTATTTGTTTCACCAACAAGCGGCTTTTCTGTCTTCTTTACTTCATCAGCTTTGTGTGTGATGGGATTGATGGCTGGGCTGCTCGGAA ATTCAACCAAGTTTCAACTTTTGGAGCTGTTTTGGACATGATAACAGACAGGATTAGCACTGCCTGTCTACTTGTCATCCTTTCTCAAGTATACAGGCCT GGCTTGACTTTCGTGTCTTTGCTTGCGCTGGATATTGGTAGCCATTGGCTGCAGATGTACAGTACTTTCTTGTTGGGTAAAGCTAGTCACAAAGATGTGA AAGACAGTACCAGCTGGCTTTTCAGAGCTTACTATGGCAACCGTATGTTTATGGCATACTGCTGTGTGGCCTGTGAGGTTCTCTATATTTCCTTGTATCT TCTTGCAGGAAACCAAACTTCACATTTATTGGATGTTCTGATGTCCTTGACAAAAGAGATTTCGCCTTACTCTGTCTTGGTCGGTTTGAGTTTGTTCGGG TGGGCGATCAAGCAAGTTGTAAATGTTATACAGATGAAGACAGCAGCAGATATCTGTGTGCTTCATGACAGCAACAAGAAAGAGAGGCCTTGA
AA sequence Show only first row Show all	>Lus10019791 pacid=23164024 polypeptide=Lus10019791 locus=Lus10019791.g ID=Lus10019791.BGIv1.0 annot-version=v1.0 MAMNNKSRPKKPSKLSVYLYIPNIIGYVRVLMNIYAFAICFTNKRLFCLLYFISFVCDGIDGWAARKFNQVSTFGAVLDMITDRISTACLLVILSQVYRP GLTFVSLLALDIGSHWLQMYSTFLLGKASHKDVKDSTSWLFRAYYGNRMFMAYCCVACEVLYISLYLLAGNQTSHLLDVLMSLTKEISPYSVLVGLSLFG WAIKQVVNVIQMKTAADICVLHDSNKKERP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10019791 [exp]	0	1
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	8.4	0.9250
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	9.5	0.9165
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	9.5	0.9084
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	17.7	0.9246
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	23.0	0.9181
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	23.2	0.9219
AT4G19160			unknown protein		Lus10038244 [exp]	33.9	0.9107
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	35.7	0.8878
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	40.8	0.9046
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	42.6	0.8855

Compare expression of checked genes

Lus10019791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.