Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16800 378 / 4e-130 high-affinity nickel-transport family protein (.1) AT4G35080 342 / 3e-116 high-affinity nickel-transport family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014116 [exp] 565 / 0 AT2G16800 411 / 4e-143 high-affinity nickel-transport family protein (.1) Lus10027851 [exp] 392 / 1e-135 AT2G16800 386 / 1e-133 high-affinity nickel-transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175700 [exp] 436 / 5e-153 AT2G16800 378 / 2e-130 high-affinity nickel-transport family protein (.1) Potri.009G135600 [exp] 424 / 3e-148 AT2G16800 358 / 3e-122 high-affinity nickel-transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF03824 [flax] [poplar] NicO High-affinity nickel-transport protein
Representative CDS sequence Show only first row Show all	>Lus10019792 pacid=23164048 polypeptide=Lus10019792 locus=Lus10019792.g ID=Lus10019792.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTACTACACACTTCTCCTTCGTCCACCGCTCCTTTCAGAATCCACAACAACCCCTCTCCATCTCTGCCACGTCTTCCCCGATTCGATGCTG CCAAACTTCGCGGTTTGTCAATTCTGCCACCACGGCCGGAGCTCCGGCGATGCGGATCCATCTCCTGCAAGTTTGAACCATCTGTTTCTTCGAGTAAATT TCCCCTTCAAGTCGATTCCTCATCCAAGATGGCACAACCTTCTGATCTTGCCGAACAGATCCCAGCTCAACCGTCTCATTTGCCAAGAAAGGCTTTGAAT GTTGCAGCATGTGTGCTACTCTCTGCAATCTTCATGTTCACAATGCATCCGATTTTCGCATCACCGGCATTAGCAACCTTCCAAACAGCTGCAAAGACTG GAACTCCAGGAGTTGGTGTAGGAACTAAACTAATGAGCACTGAAATTTTGAGCAGTGCTTGGACTGGTTTCTTTGCCGGTTGCCTACACACACTTTCAGG CCCTGATCACCTTGCAGCATTAGCTCCGCTTTCGATAGGCCGATCCAGGCTCGAAAGTGCTGCAGTTGGAGCTTTGTGGGGGTGCGGTCATGATGCCGGT CAGGTAATCTTCGGCCTGCTCTTTCTCTTGCTCAAGGATCGCCTCCATATCGAGATTCTCAGAACTTGGGGCACTCGAGTAGTAGGTATAACCCTACTTG TCATCGGTGGTATGGGAATTAAGGAAGCTTCAGAAGTCCCGACGCCTTGTGTCGCGTTAGAAAACGGGGAGTGCGATGTCAGTGTTTACGAATCAGCTGC ACTTGAATCCTCCTCCTCCCCTGCTGTAGGGAAGAAGAAGAAGATCGGTTTCGCTACATTCGCAACAGGGATCGTCCATGGTTTGCAACCCGATGCACTC ATGATGGTGTTGCCGGCACTCGCCTTGCCTTCACGAGTTGCTGGTGCTGCGTTTCTGGCTATGTTCCTCGTCGGAACCGTCATTGCGATGGGATGCTATA CTGTGTTCATAGGATCTTGCAGCGAGGCGTTGAAGGACCGAGTACCCAGAATAACAGAGAAACTGACGTGGGCATCTTCTCTTATAGCTATTACCCTTGG TGTCGCCATTCTCGTCAGCCAGTTCTTTGGATTCAGCTTGTATTAG
AA sequence Show only first row Show all	>Lus10019792 pacid=23164048 polypeptide=Lus10019792 locus=Lus10019792.g ID=Lus10019792.BGIv1.0 annot-version=v1.0 MERLLHTSPSSTAPFRIHNNPSPSLPRLPRFDAAKLRGLSILPPRPELRRCGSISCKFEPSVSSSKFPLQVDSSSKMAQPSDLAEQIPAQPSHLPRKALN VAACVLLSAIFMFTMHPIFASPALATFQTAAKTGTPGVGVGTKLMSTEILSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRSRLESAAVGALWGCGHDAG QVIFGLLFLLLKDRLHIEILRTWGTRVVGITLLVIGGMGIKEASEVPTPCVALENGECDVSVYESAALESSSSPAVGKKKKIGFATFATGIVHGLQPDAL MMVLPALALPSRVAGAAFLAMFLVGTVIAMGCYTVFIGSCSEALKDRVPRITEKLTWASSLIAITLGVAILVSQFFGFSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	0	1
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	4.1	0.8976
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	6.9	0.8713
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	7.6	0.8910
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	8.1	0.8643
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	9.2	0.8742
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	11.0	0.8420
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	12.0	0.8451
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	13.0	0.8343
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	18.3	0.8324
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	18.7	0.8441

Compare expression of checked genes

Lus10019792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.