Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68010 677 / 0 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 121 / 8e-30 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 117 / 1e-28 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G79870 112 / 3e-28 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT3G19480 115 / 8e-28 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 96 / 7e-22 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 86 / 3e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 75 / 1e-14 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 62 / 2e-10 FDH formate dehydrogenase (.1) AT1G01510 62 / 2e-10 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014115 [exp] 722 / 0 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 119 / 1e-30 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 118 / 3e-30 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10027868 [exp] 117 / 2e-28 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 116 / 3e-28 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 115 / 7e-28 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10025795 [exp] 112 / 8e-28 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 105 / 3e-25 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 104 / 4e-25 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175800 [exp] 694 / 0 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.010G249600 [exp] 125 / 3e-31 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.008G009500 [exp] 121 / 5e-30 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.014G022800 [exp] 120 / 2e-29 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 119 / 3e-29 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 119 / 4e-29 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 115 / 8e-28 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.003G052700 [exp] 108 / 1e-26 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 97 / 2e-22 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 95 / 2e-21 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10019793 pacid=23163975 polypeptide=Lus10019793 locus=Lus10019793.g ID=Lus10019793.BGIv1.0 annot-version=v1.0 ATGGCGAAGCCGGTCTCCATAGAAGTTTGGAATCCTAATGGGAAATACAGAGTTGTCAGCACTAAATCCATGCCCGGTACTCGCTGGATCAATCTCCTCA TCGACCAGGACTGCCGTGTTGAGATATGTACCCAGAAGAAAACAATCTTATCCGTCGAGGATATCATCGCTCTAATCGGCGACAAGTGTGACGGAGTCAT TGGCCAGTTGACGGAGGACTGGGGAGAAACTCTGTTCGCCGCACTGAGCAAAGCTGGCGGTAAAGCTTTCAGCAACATGGCTGTAGGGTACAACAATGTG GACGTTAATGCAGCGAATAAGTACGGAGTTGCAGTTGGAAACACTCCTGGAGTTCTTACGGAGACAACAGCTGAGTTAGCTGCATCACTTTCGTTGGCAG CAGCTAGGAGAATCGTGGAGGCTGACGAGTTCATGAGAGCTGGGTTATACGATGGATGGCTTCCACACTTGTATGTTGGGAACTTGCTCAAGGGGCAGAC TGTTGGTGTCATTGGAGCTGGTAGAATCGGATCAGCCTATGCTAGAATGATGGTTGAAGGGTTCAAAATGAATCTTATATACTTTGATTTGTATCAATCC ACGAGGCTGGAGAAGTTTGTTACCGCTTATGGACAGTTCCTCAAAGCAAACGGTGAGCAACCTGTTACCTGGAAGAGAGCATCCTCCATGAGCGAGGTGC TCCAAGAGGCTGATGTGGTTAGTCTTCACCCCGTTTTGGATAAGACCACTTACCACTTGATCAACAAAGAGAGTCTTGCTACTATGAAGAAGGAAGCCAT CCTGATAAACTGCAGCAGGGGTCCTGTGGTTGACGAAGTAGCCCTTGTTGAACATTTGAAACAGAACCCAATGTTTCGCGTTGGTCTCGATGTCTTTGAG GATGAGCCTTACATGAAACCAGGACTTTCTGAAATGAAGAATGCTATTGTTGTGCCACACATTGCTTCTGCTTCCAAGTGGACTCGCGAAGGAATGGCAA CTCTGGCAGCTCTAAATGTCTTGGGAAAGATCAAAGGGTACCCAGTATGGGGAGATCCGAACAAAGTAGAACCTTTCCTGAATGAGAATGCTCCTCCTCC AGCTGCAAGTCCAAGCATTGTGAACGCCAAAGCCCTCGGTTTACCTGTTTCTAAGTTGTGA
AA sequence Show only first row Show all	>Lus10019793 pacid=23163975 polypeptide=Lus10019793 locus=Lus10019793.g ID=Lus10019793.BGIv1.0 annot-version=v1.0 MAKPVSIEVWNPNGKYRVVSTKSMPGTRWINLLIDQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNV DVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLYVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQS TRLEKFVTAYGQFLKANGEQPVTWKRASSMSEVLQEADVVSLHPVLDKTTYHLINKESLATMKKEAILINCSRGPVVDEVALVEHLKQNPMFRVGLDVFE DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNKVEPFLNENAPPPAASPSIVNAKALGLPVSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	0	1
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	1.0	0.9430
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	2.8	0.9157
AT2G01870			unknown protein		Lus10030135 [exp]	3.2	0.9308
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	3.5	0.9259
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	9.2	0.8784
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034382 [exp]	14.3	0.9030
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	15.1	0.8585
AT1G44920			unknown protein		Lus10007720 [exp]	16.0	0.8904
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	18.0	0.8703
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	18.3	0.8914

Compare expression of checked genes

Lus10019793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.