Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69370 241 / 8e-80 CM-3, CM3 chorismate mutase 3 (.1) AT3G29200 240 / 3e-79 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT5G10870 195 / 1e-62 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032998 [exp] 330 / 3e-115 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10015378 [exp] 318 / 4e-105 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10014114 [exp] 229 / 7e-77 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1) Lus10007444 [exp] 179 / 8e-56 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088700 [exp] 268 / 2e-90 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 235 / 1e-77 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1) Potri.018G019250 [exp] 184 / 5e-58 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019795 pacid=23164044 polypeptide=Lus10019795 locus=Lus10019795.g ID=Lus10019795.BGIv1.0 annot-version=v1.0 ATGGATGACTTCCACGGTTCTCTTGTTGAGTACATGGTTAAAGAAACTGAAAAGCGACATGCCAAGGTGGGTAGGTACAGAAGTCCTGATGAGCATCCTT TCTTCCCAGATGATTTACCTGAACCATTGTTGCCACCAATGCACTATCCTAAGGTGTCCGATTCAGTGAATATAAATAGTACCATCTGGGGCATGTACTT CAATGATCTTCTTCCAGGACTGGTCAAGGCAGGAGATGATGGAAACTGTGGATCATCTGCAGTATGCGACACCATCTGCCTCCAGGCTCTGTCAAAGCGA ATCCATTATGGAAAATATGTGGCCGAGTCTAAATTCCATGCGAACCCAAATGAATACCAAGCTGCTATAGAAGCACAAGACAAAGAGGGATTGATGGCCT TGCTGACGTACCCAGAAGTTGAGAAAAAGGTAGTGGACCGAGTAGAGCTGAAAGCCAAGATATTTGCGCAGGAAGTGACAATGAAAGAAGGGAAATTAGC TGAATGCGAGCCAGTGTACAAGATAGACCCATGCTTGGTTGCTCATCTTTATGGGAAATGGATCATGCCTCTGACCAAGGAAGTTCAAGTTAAGTACTTG CTGAGAAGGCTGGATTGA
AA sequence Show only first row Show all	>Lus10019795 pacid=23164044 polypeptide=Lus10019795 locus=Lus10019795.g ID=Lus10019795.BGIv1.0 annot-version=v1.0 MDDFHGSLVEYMVKETEKRHAKVGRYRSPDEHPFFPDDLPEPLLPPMHYPKVSDSVNINSTIWGMYFNDLLPGLVKAGDDGNCGSSAVCDTICLQALSKR IHYGKYVAESKFHANPNEYQAAIEAQDKEGLMALLTYPEVEKKVVDRVELKAKIFAQEVTMKEGKLAECEPVYKIDPCLVAHLYGKWIMPLTKEVQVKYL LRRLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10019795 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030893 [exp]	1.0	0.9083
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	10.5	0.8775
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	12.5	0.8079
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	22.0	0.8434
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	30.6	0.8294
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	31.2	0.8330
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	35.5	0.8392
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	38.2	0.8303
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	42.0	0.8284
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	44.7	0.8244

Compare expression of checked genes

Lus10019795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.