Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 770 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 410 / 2e-134 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 397 / 5e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 384 / 2e-124 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 369 / 9e-121 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 372 / 4e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G45350 365 / 1e-118 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 362 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 361 / 4e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 357 / 4e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014113 [exp] 1226 / 0 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 413 / 2e-135 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 402 / 8e-132 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 402 / 3e-131 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 400 / 9e-131 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 387 / 3e-127 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031423 [exp] 381 / 4e-124 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 374 / 4e-123 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 368 / 8e-121 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125500 [exp] 853 / 0 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 424 / 2e-142 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 426 / 2e-140 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 409 / 1e-134 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 403 / 4e-134 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G128900 [exp] 405 / 4e-133 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 402 / 3e-132 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 403 / 1e-131 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 397 / 5e-131 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G086100 [exp] 389 / 9e-129 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019797 pacid=23164014 polypeptide=Lus10019797 locus=Lus10019797.g ID=Lus10019797.BGIv1.0 annot-version=v1.0 ATGTCTAGTGGCGCTCAAATGTCGGCTCCAATGAGAGCTCCGGCCTGGGTCTCAACCAGAAGACTATTCGAGCAAAAACTCCTGGAGCTTCCCAATTGTA CCAATTTATCCCATGTAAAGCAGGTTCATGCTCAAATAATTAAGCAGAACCTCCACACGGACCTCTACGTAGCTCCCAAGTTGATATCGGCATTCTCCCA CTGTCATCAAATGAAGCTGGCTCTCAGGGTCTTTAACCAAGTTCGCCACCCAAACGTGTTCTTGTACAACACCCTCATTCGAGCTCATGTCCACACCTCT CAACCTTCCATCGCTTTCGCTGCTCTCTTTGAGATGCAGCAAAATGGCCTCTTTCCCGACAATTTCACTTACCCATTTCTTCTTAAAGCCTGTAGTGCCG GGTCTTGGCTGCCCATGGTCCAAACAATACACGGCAGTTTACATAAGCTTGGATTTTTTAGTGATCCTTTTGTGCCTAATTCCTTGATTGATAGCTACTG CAAGTGTGGTGGATCGGGAATTCTATCTGCTATGATGCTGTTTAGGAGTATGGATAAGAAAGATATTGTATCTTGGAATACAATGATTTGTGGGCTGGTT AGAACTGGGGATTTGAGCGGAGCCCGCAAGCTCTTCGATGAAATGCCTGTGAGAGATTCCATTAGTTGGAATACAGTTTTGGATGCATATGTAAAGGCCG GTGAGATGAATGAAGCCTTTGAGTTGTTTCAGATTATGCCAGAAAGGAATGTTGTGTCATGGTCTACGATGGTTTTTGGTTATAGTAAAGCAGGGAATAT ACAAATGGCTCGAATGCTGTTTGATAAAATGCCATCTAGGAATTTGGTCCCTTGGACTATAGTTATATCTGGGTATGCCCAAATGGGGCTAGGGCAGGAG GCAGTAAGATTGTATGATTTAATGGAGAAAGACGGACTAGTGCTTGATTCGGGAGCTGCTATCAGCATACTGGCTGCTTGTGCAGAGTCTGGCTTACTGT GTCTAGGGAATAGAGTTCATGCCTCTATCATGAATACTAGATTGAAATGTCATGTTGAAGTTTGTAATGCCTTGGTTTATATGTATGCAAAATGCGGTAT GGTAAAGAAGGCATATGAAGTATTTCAGCAGATGGCAAAGACAGATTTAGTCTCTTGGAATTGCATGCTTCAAGGGTTAGCCGTAAATGGGCATGGAGAT ATAGCACTTCAGTTCTTTTCTAGGATGAAACAAGAAGGTTTCAAACCTGATAAGTTTACTTTGGTAGGTGTTCTGTGTGCTTGTACTCATGCTGGCTTAA TTAATAAGGGCCTCGGGTACTTCCACAATATGGAGAGGGAATATGGGATTGCTCCTGAGATTGAGCACTATGGCTGCGTGGTTGATCTGTTGGGCCGTGC TGGACTTCTCAAGGATGCCTTTAGGCTTGTGAAAAGCATGCCATTGGAACCAAATGTTGTTATCTGGGGTACCCTTCTAGGTGCCTGCAGAATGCATAAT GAGGTCGATCTGGCTAAGAAGGTTCAAGATCACATGGTTGAATCTGATCGATCGGAGCATGGTAATGGTTCCATTTTGTCAAATATCTTCGCTGCTGCTG GGGACTGGGTGAATGTCGCTAACGTGAGGCTGGAAATGAAGAGTGCTGGAATCCAAAAGCCTTCTGGTGCCAGTTTCATTGAGGTAGATGATGAGGTCCA TGAATTCACCGTATTGGACAAGTCACATCCTGAGTCCGACAAAATTTATGAGACAATTGATAGATTGATACAGGAACTGAGACTAATCGCTGATGCTACA ATTGACAACCAACTGATGCAATTGATGCATTGA
AA sequence Show only first row Show all	>Lus10019797 pacid=23164014 polypeptide=Lus10019797 locus=Lus10019797.g ID=Lus10019797.BGIv1.0 annot-version=v1.0 MSSGAQMSAPMRAPAWVSTRRLFEQKLLELPNCTNLSHVKQVHAQIIKQNLHTDLYVAPKLISAFSHCHQMKLALRVFNQVRHPNVFLYNTLIRAHVHTS QPSIAFAALFEMQQNGLFPDNFTYPFLLKACSAGSWLPMVQTIHGSLHKLGFFSDPFVPNSLIDSYCKCGGSGILSAMMLFRSMDKKDIVSWNTMICGLV RTGDLSGARKLFDEMPVRDSISWNTVLDAYVKAGEMNEAFELFQIMPERNVVSWSTMVFGYSKAGNIQMARMLFDKMPSRNLVPWTIVISGYAQMGLGQE AVRLYDLMEKDGLVLDSGAAISILAACAESGLLCLGNRVHASIMNTRLKCHVEVCNALVYMYAKCGMVKKAYEVFQQMAKTDLVSWNCMLQGLAVNGHGD IALQFFSRMKQEGFKPDKFTLVGVLCACTHAGLINKGLGYFHNMEREYGIAPEIEHYGCVVDLLGRAGLLKDAFRLVKSMPLEPNVVIWGTLLGACRMHN EVDLAKKVQDHMVESDRSEHGNGSILSNIFAAAGDWVNVANVRLEMKSAGIQKPSGASFIEVDDEVHEFTVLDKSHPESDKIYETIDRLIQELRLIADAT IDNQLMQLMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	0	1
					Lus10036489 [exp]	2.4	0.9320
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	4.5	0.9193
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	6.0	0.9278
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	11.6	0.9217
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	13.3	0.8665
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	13.6	0.9108
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	15.0	0.9105
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	16.0	0.9207
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	16.2	0.9152
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	16.8	0.8836

Compare expression of checked genes

Lus10019797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.