Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 317 / 5e-105 Protein of unknown function (DUF1624) AT5G27730 267 / 1e-85 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027468 [exp] 424 / 1e-147 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10039223 [exp] 417 / 4e-145 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10014112 [exp] 371 / 1e-126 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 285 / 5e-96 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10010030 [exp] 280 / 2e-90 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10020653 [exp] 254 / 2e-80 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 243 / 4e-76 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 237 / 2e-73 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10036333 [exp] 155 / 3e-44 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136700 [exp] 449 / 2e-157 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 447 / 1e-156 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 318 / 1e-105 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 294 / 1e-95 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 289 / 6e-94 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 258 / 1e-81 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 244 / 1e-76 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 228 / 2e-70 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10019798 pacid=23164036 polypeptide=Lus10019798 locus=Lus10019798.g ID=Lus10019798.BGIv1.0 annot-version=v1.0 ATGGCATTGTCCACCACAGGCTATGGCCAGATACCATTCGACGAGGAGATGCAGAAACCCACCTACCGGCCACCGTCCCCGTTCGACGACGGCGGCGGCG ACTCTGCCCAGCTCCTCAGATCGTTCAAGAAGACCAAACGCCTAGCTTCCCTCGACGCCTTCCGTGGCCTCTGCGTCTTCCTGATGATGTTGGTTGATTA TGGGGGTTCAGTTTTCCCAATCATTGCTCATTCGCCATGGAACGGCCTTCACTTGGCGGATTTCGTGATGCCTTTCTTCCTTTTCGTCGTTGGCGTATCC ATTGCGCTTGTCTACAAGAAAGCACCAAACAAACCAGAAGCCACATGGAAGGCTGCGGGTAGAGCGGCTAAGTTATTCTTGTTGGGTGTTCTTCTACAAG GTGGGTTTCTTCACGGATTGAATTCACTAACCTATGGAGTTGACATGGAAAAGTTACGTTTGCTAGGAATTTTGCAGAGAATATCAATTGGTTACATTGT TGGGGCTGTTTGTGAGATTTGGCTTTCGCGTAGAACAAGGAGGGAGATTGGGATTTTGAAGAGCTATTACTGGCACTGGGTTGCTGCATTTGCACTTATT GCTGTGTATCTCGGGTTACTATATGGCATATATGTTCCGGACTGGCAGGTTGTACATGATGCAAATGTAAATTGTTCGGTAAGAGGTGACGTTGGCCCTG CTTGTAATTCAGCTGGATTAATTGACCGCTATGTTCTTGGTATCAATCACCTCTCGATAACAGCTGCAGTCACGTGCTTAATCGGACTTCAGTATGGCCA TGTTCTTGCTCATTTGCAGGATCACAAAGGACGCCTGGAAAACTGGTGTGGTTTCTCAGTCTTTTTGCTTGTGCTCGGGCTGTTCCTCGCCCTTCTTGGC TTCCCGATCAACAAGCCTCTCTATTCAATCAGTTACATGTTGATCACTTCTGCTTCAGCAGGCATCACATTTTGCGCACTGTATTTGTTGGTCGATATAT ATGGCTACAGATGGGTGACATTACCATTGGAATGGATGGGGAAGCATGCCTTGAGCATCTTCATCATCGTATCTTCCAACTTAGCGGTCATTGCAATTCA AGGTTTCTACTGGAAATCACCTGAAAACAACCTGGTAGTTATCCTCTCCTAG
AA sequence Show only first row Show all	>Lus10019798 pacid=23164036 polypeptide=Lus10019798 locus=Lus10019798.g ID=Lus10019798.BGIv1.0 annot-version=v1.0 MALSTTGYGQIPFDEEMQKPTYRPPSPFDDGGGDSAQLLRSFKKTKRLASLDAFRGLCVFLMMLVDYGGSVFPIIAHSPWNGLHLADFVMPFFLFVVGVS IALVYKKAPNKPEATWKAAGRAAKLFLLGVLLQGGFLHGLNSLTYGVDMEKLRLLGILQRISIGYIVGAVCEIWLSRRTRREIGILKSYYWHWVAAFALI AVYLGLLYGIYVPDWQVVHDANVNCSVRGDVGPACNSAGLIDRYVLGINHLSITAAVTCLIGLQYGHVLAHLQDHKGRLENWCGFSVFLLVLGLFLALLG FPINKPLYSISYMLITSASAGITFCALYLLVDIYGYRWVTLPLEWMGKHALSIFIIVSSNLAVIAIQGFYWKSPENNLVVILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	0	1
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	2.2	0.8339
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	4.2	0.8193
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	4.6	0.7760
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	6.0	0.8146
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	8.9	0.7985
AT4G27620			unknown protein		Lus10008948 [exp]	10.0	0.7495
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	12.0	0.7958
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	13.4	0.7908
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	15.8	0.8059
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	16.0	0.8168

Compare expression of checked genes

Lus10019798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.