Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 186 / 4e-59 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 43 / 1e-05 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014111 [exp] 463 / 3e-168 AT2G15220 202 / 3e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 210 / 3e-68 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 206 / 1e-66 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 195 / 2e-62 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 193 / 8e-62 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 193 / 1e-61 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 193 / 2e-61 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10001609 [exp] 192 / 3e-61 AT2G15220 198 / 1e-63 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 190 / 1e-60 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 215 / 1e-70 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 210 / 2e-68 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 208 / 8e-68 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 203 / 1e-65 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 187 / 1e-59 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019799 pacid=23163969 polypeptide=Lus10019799 locus=Lus10019799.g ID=Lus10019799.BGIv1.0 annot-version=v1.0 ATGCCAATGGTCACATTTCTTCCCATCTCGCTATTCCTTATCATCACTTGTGTAGTAATCTCACTATCATCAATCCCGTCAACCCAAGGAATCGAGTACC CAGTCACGATCACATCCCCAAACACCTCCACCGGCGTCCAACGCTTCATCCATCGGATCGGAAAGAGCTACGCCAGCAGGAAGATGGAATCCGGATCCAA CTTCATTTGGAAAACCCTCCACCAGACCAATTCCTCAGACCGTAAGGATTACCGGAGAATCGAGCTCTTCATCCAGGACATGAAGCAGCAGAACACCTAC CACGTGGACAACAGGATCGCAATAAGCGCAGAGTATATCGGGAACTACACTGCAGGGAACCTGAAGAGAGAGTTCACAGGGATGCTGTATACCCAGCTGG TTAATGTTTGGGGCTGGAACGGTATGGGCCAGGCACCCGACGGGTTGATTAGTGGGATCGCAGGTTACGTAAGGATGAAGGCTCGACTGGAGGCTGCGAC TGGGTGGGCCCGTCCAGGGGACGGGAAGAGGTGGGACCAAGGGGAGGATATCACTGCGAGGTTTTTGGAGTATTGTGGTGGGTTTAAGGAAGGGTTTGTT GGTGAGCTTAATAGGAAGATGAAGGATGGTTATTCCAATGACTATTTTAAGGAGCTGCTGGGAAAGAGCGTTGAGCAGGTTTGGAAAAGTTACAAGGCTA GGTATCCCTGA
AA sequence Show only first row Show all	>Lus10019799 pacid=23163969 polypeptide=Lus10019799 locus=Lus10019799.g ID=Lus10019799.BGIv1.0 annot-version=v1.0 MPMVTFLPISLFLIITCVVISLSSIPSTQGIEYPVTITSPNTSTGVQRFIHRIGKSYASRKMESGSNFIWKTLHQTNSSDRKDYRRIELFIQDMKQQNTY HVDNRIAISAEYIGNYTAGNLKREFTGMLYTQLVNVWGWNGMGQAPDGLISGIAGYVRMKARLEAATGWARPGDGKRWDQGEDITARFLEYCGGFKEGFV GELNRKMKDGYSNDYFKELLGKSVEQVWKSYKARYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019799 [exp]	0	1
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	9.1	0.7307
AT5G39590			TLD-domain containing nucleola...		Lus10012406 [exp]	20.2	0.7049
AT2G46080			unknown protein		Lus10005122 [exp]	20.9	0.7261
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	23.5	0.7079
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	25.2	0.7184
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	25.7	0.7258
AT4G32030			unknown protein		Lus10001935 [exp]	28.6	0.7233
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	31.3	0.7029
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	32.2	0.7059
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	33.5	0.7163

Compare expression of checked genes

Lus10019799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.