Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 238 / 9e-78 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 201 / 4e-63 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 190 / 7e-59 Glycosyl hydrolase superfamily protein (.1) AT3G57240 186 / 1e-57 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT5G56590 163 / 3e-47 O-Glycosyl hydrolases family 17 protein (.1) AT2G26600 154 / 1e-45 Glycosyl hydrolase superfamily protein (.1.2) AT1G32860 156 / 4e-45 Glycosyl hydrolase superfamily protein (.1) AT5G20390 153 / 1e-44 Glycosyl hydrolase superfamily protein (.1) AT2G01630 153 / 3e-44 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G15800 151 / 1e-43 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014110 [exp] 384 / 8e-136 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 249 / 1e-79 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 235 / 1e-76 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 235 / 2e-76 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 213 / 1e-67 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10002807 [exp] 204 / 2e-64 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027859 [exp] 189 / 6e-61 AT3G57240 185 / 4e-58 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 183 / 2e-56 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10031037 [exp] 182 / 1e-55 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 229 / 2e-74 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 226 / 7e-73 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 206 / 4e-65 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 204 / 2e-64 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.001G255100 [exp] 197 / 6e-62 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 191 / 1e-59 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 191 / 5e-59 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 177 / 2e-54 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 166 / 9e-50 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.018G068600 [exp] 165 / 6e-48 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10019800 pacid=23164061 polypeptide=Lus10019800 locus=Lus10019800.g ID=Lus10019800.BGIv1.0 annot-version=v1.0 ATGCCTGGGTCCAAACCAACGTCTTCAACCACCTACCCGGCGTCAGATTCCGTTACATCGCTGTCGGAAACGAAGTCAAACCCGACGACCCGTTCGCCCA ATTCCTCTATCCAGCGATGGTCAACATCCATAACTCCATTAGCCGATCTCCAGCGGCCAAACGGAATCAAAGTCTCCTCCGCATTCATCTACGGCGTCAT CGGAGTCTCATACCCGCCGTCTCAGGGCGATTTCAACAAAGATTTGTGGTCGATCGTCGAACCCATTCTCAAATTCTTGGTCAAGAACAGATGCCCTCTG CTTCTAAACGTGTACCCGTTTTTTGCGTACTTATTTAATCCGGGTCAGATTAGATTAGACTACGCTCTGTTCACGCCTCCAGCCGGGTTGGTACCCGACC CGCCGCTGAGCTACGGTAATCTGTTCGATGCCATGGTGGACGCGGCGTACTCTGCTTTGGAGAAGGCTGGGGCAGGGGAACTGAAGATTGTGGTGGCGGA GACGGGTTGGACGACCGACGGCGCCGGTAATGCGGCGACGGTGGAGAATGCGAGGCTTTATAATAACAATTTGGTGAAGCATGTGATGGGAGGGACGCCG AAGCGGCCCGGAAAGGAGATTGAGACGTATATATTTGGGTTGTTTGACGAGGATTTGAAGTCGCCGGAGACTGAGAAGCATTGGGGAGTGTTTAGTCCCG ATAAGAATCTTAAGTATCCGATGAATTTTAGAACATGA
AA sequence Show only first row Show all	>Lus10019800 pacid=23164061 polypeptide=Lus10019800 locus=Lus10019800.g ID=Lus10019800.BGIv1.0 annot-version=v1.0 MPGSKPTSSTTYPASDSVTSLSETKSNPTTRSPNSSIQRWSTSITPLADLQRPNGIKVSSAFIYGVIGVSYPPSQGDFNKDLWSIVEPILKFLVKNRCPL LLNVYPFFAYLFNPGQIRLDYALFTPPAGLVPDPPLSYGNLFDAMVDAAYSALEKAGAGELKIVVAETGWTTDGAGNAATVENARLYNNNLVKHVMGGTP KRPGKEIETYIFGLFDEDLKSPETEKHWGVFSPDKNLKYPMNFRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019800 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	5.1	0.9612
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	5.7	0.9497
					Lus10022008 [exp]	7.1	0.9555
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	8.1	0.9434
AT1G17860			Kunitz family trypsin and prot...		Lus10039208 [exp]	11.4	0.9285
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	12.0	0.9315
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	15.2	0.9148
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	15.9	0.9481
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	18.7	0.9415
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	24.6	0.9333

Compare expression of checked genes

Lus10019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.