Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 355 / 3e-122 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 331 / 6e-113 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 327 / 4e-111 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 301 / 6e-101 Glycosyl hydrolase superfamily protein (.1) AT1G77780 217 / 8e-68 Glycosyl hydrolase superfamily protein (.1) AT5G20390 211 / 6e-66 Glycosyl hydrolase superfamily protein (.1) AT5G56590 211 / 6e-64 O-Glycosyl hydrolases family 17 protein (.1) AT5G20340 206 / 8e-64 BG5 beta-1,3-glucanase 5 (.1) AT5G20330 201 / 5e-62 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT2G01630 198 / 3e-60 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014109 [exp] 616 / 0 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 524 / 0 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 385 / 6e-134 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 375 / 7e-130 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014110 [exp] 351 / 3e-121 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 284 / 3e-94 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 278 / 4e-92 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 254 / 7e-79 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10019800 [exp] 234 / 3e-76 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 408 / 3e-143 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 390 / 3e-136 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 390 / 7e-136 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 361 / 1e-124 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G142800 [exp] 338 / 2e-115 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 332 / 1e-113 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 313 / 1e-105 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 270 / 2e-89 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 234 / 1e-74 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 228 / 2e-72 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10019801 pacid=23164028 polypeptide=Lus10019801 locus=Lus10019801.g ID=Lus10019801.BGIv1.0 annot-version=v1.0 ATGGGTTCACTTTCAACAGCTGTGTTGGTCATGGCTCTGCTTCTACTTGGCATCATTGACACTACATCTGCCCAAATTGGAGTGTGTTACGGGATGCTAG GCAGAGTGCCACCACCACCTGAAGTCATAGCCCTATACAACCAAAAGAACATCCGAAGGATGCGCCTCTACGACCCCAACCCGGCCGCCCTCCAGGCCCT TCGAGGAACCAACATCGAGCTCATCCTCGGCGTCCCCAACGATCGGCTCCAGTTCGTTGCGGCCAGCCAGGCCAATGCCGACTCGTGGGTCCGGACCAAT GTCGTTAACTATGGCAATGTCCGGTTCAGGTACATTGCGGTTGGGAACGAGGTTCAACCGGGTGACAACCGGTACGCCCCGTTCCTTGTTCGAGCCATCC AGAATATACAAAATGCAATCAACTCGAATAATCTCGGATCGAGGATCAAAGTCTCCACGGCTTTTGATTACGGGATCATGGCCCAGTCTTCCCCGCCTTC CCAAGGGTCTTTCAAGGGAGAGTATAACAATCTTCTGAATCCGATCCTTCGTCATTTAGCAGCTAACAGGTCACCGTTGTTATTAAACTTGTATCCATTT TTCAGCTACCGTGACAATATGGCTCAGATCCGACGCGATTACGCACTCTTTACTGCTCCACCGGGTTTGGTACAAGACGGACCGCGTAGATATAATAACT TATTCGACGCAATGTTGGATGCTACTTACTCGGCTCTAGAAAAAGTAGGAATGGGGAGTCTGAACATTGTGGTGTCAGAGACTGGTTGGTCGAGTGCCGG AGGAGGGCCCGCAACTACGACCGAAAACGCAAGGATTTATATTAACAACTTGGTTCAACATGTCAAGAGAGGAACCCCGAAGCGACCAAACGGACCGATT GAAACCTATATCTTCGCAATGTTTGACGAAGAGAATAAGAGCCCCGAGTTGGAGAAACATTTCGGGTTGTTTGGTGTTAATAAGCAGCCCAAGTATCAGA TTAATCTAAACTGA
AA sequence Show only first row Show all	>Lus10019801 pacid=23164028 polypeptide=Lus10019801 locus=Lus10019801.g ID=Lus10019801.BGIv1.0 annot-version=v1.0 MGSLSTAVLVMALLLLGIIDTTSAQIGVCYGMLGRVPPPPEVIALYNQKNIRRMRLYDPNPAALQALRGTNIELILGVPNDRLQFVAASQANADSWVRTN VVNYGNVRFRYIAVGNEVQPGDNRYAPFLVRAIQNIQNAINSNNLGSRIKVSTAFDYGIMAQSSPPSQGSFKGEYNNLLNPILRHLAANRSPLLLNLYPF FSYRDNMAQIRRDYALFTAPPGLVQDGPRRYNNLFDAMLDATYSALEKVGMGSLNIVVSETGWSSAGGGPATTTENARIYINNLVQHVKRGTPKRPNGPI ETYIFAMFDEENKSPELEKHFGLFGVNKQPKYQINLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	1.0	0.9193
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	4.7	0.8364
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	5.7	0.8753
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	5.8	0.8197
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	7.5	0.8852
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	8.9	0.8379
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	9.2	0.8704
					Lus10036864 [exp]	13.2	0.8291
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	15.5	0.8166
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	15.9	0.8813

Compare expression of checked genes

Lus10019801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.