Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 184 / 4e-58 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 160 / 5e-49 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014108 [exp] 385 / 2e-132 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019806 [exp] 180 / 2e-56 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10013861 [exp] 171 / 1e-52 AT2G15220 209 / 3e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026577 [exp] 169 / 6e-52 AT2G15220 202 / 4e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 167 / 1e-51 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026578 [exp] 167 / 4e-51 AT2G15220 209 / 7e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026582 [exp] 167 / 4e-51 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 166 / 5e-51 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10038602 [exp] 166 / 1e-50 AT2G15220 166 / 6e-51 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 172 / 1e-53 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 171 / 7e-53 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 170 / 1e-52 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 168 / 5e-52 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 165 / 6e-51 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 56 / 4e-09 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019802 pacid=23163997 polypeptide=Lus10019802 locus=Lus10019802.g ID=Lus10019802.BGIv1.0 annot-version=v1.0 ATGGAAACCATCAATTTCTCCCCTCAAGTTTTCCTCACCTTGCTAGCAACAACAGCATTGTTACAAGCCACACAAGCAACGCCGGCGACTACAGAGTACG CCGTCATCAACAACGCCGGCAATACCAAAGGGGGCGCCCTCTTCTCCTCCCGAGTTGGAGAACAGTACGCCAAAGACACAATGGAATCAGCTTCCAATTT CATCTTCAAGATCTTCAACCAACCCGACCCAACAAGCCGGAAACCCGTCACGAAAGTCACCACCTTCATTGACGGCAACACAACCGACCCCGGGTTGTAT GTGTCCGACCACGCATTCCACATCGGAGCGAAGTACCTAGCGAACTTCACCGGCGGCGATGTCAAGTTCGTATTCGCCGGGTTGGTTTACCGGTACATGA CGTACGTTTGGGGATGGGACGGAGGTGGGAAAGCACTGGCGGGACTCCGGTCGGGGATTGGGGAGTATGTGAGGCTGAAGGCTGGTTTCGGGCCGCGGAG ATATTGGGCTGGGAAGAGAGATGTGGGAACCTATTGGGCAGAAGGAGGAGAAGTGACGGCCCGGTTTTTGAACTATTGTGTTGGGCTGAGGAAAGGGTTT GTTTGGGAGATGAATGAGAGAATGAAGGGTGATTATAGTGATGGGATTTTTAAGAGTTTGCTTGGGAAGGATGTTGATCAGTTGTGGCATGACTATAAGG CTAAGTATGGTACAATATCTTAG
AA sequence Show only first row Show all	>Lus10019802 pacid=23163997 polypeptide=Lus10019802 locus=Lus10019802.g ID=Lus10019802.BGIv1.0 annot-version=v1.0 METINFSPQVFLTLLATTALLQATQATPATTEYAVINNAGNTKGGALFSSRVGEQYAKDTMESASNFIFKIFNQPDPTSRKPVTKVTTFIDGNTTDPGLY VSDHAFHIGAKYLANFTGGDVKFVFAGLVYRYMTYVWGWDGGGKALAGLRSGIGEYVRLKAGFGPRRYWAGKRDVGTYWAEGGEVTARFLNYCVGLRKGF VWEMNERMKGDYSDGIFKSLLGKDVDQLWHDYKAKYGTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	2.0	0.8624
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	4.7	0.8899
AT4G31115			Protein of unknown function (D...		Lus10018151 [exp]	5.2	0.7815
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	9.3	0.7625
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	9.3	0.8451
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	10.8	0.8451
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	12.0	0.8451
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	13.2	0.8451
					Lus10032779 [exp]	14.0	0.6962
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10019689 [exp]	14.1	0.6916

Compare expression of checked genes

Lus10019802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.