Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 212 / 2e-69 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 50 / 3e-08 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014107 [exp] 240 / 2e-79 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 232 / 3e-77 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 230 / 2e-76 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 213 / 1e-69 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 208 / 1e-67 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 206 / 6e-67 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 203 / 2e-65 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019804 [exp] 197 / 5e-64 AT2G15220 180 / 2e-57 Plant basic secretory protein (BSP) family protein (.1) Lus10019799 [exp] 190 / 1e-60 AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 265 / 2e-90 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 258 / 1e-87 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 257 / 3e-87 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 254 / 4e-86 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 224 / 5e-74 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019803 pacid=23164025 polypeptide=Lus10019803 locus=Lus10019803.g ID=Lus10019803.BGIv1.0 annot-version=v1.0 ATGTCTAGGTGGTACTTGTTGCTGGTGGCAACCCTCTCTGCCATCGAATTGGTCGACGCGACCAATTACACCGTCCTCAACACAGTTCCCACGTCGAAGG GTGGAAAGAGATTCACTTATTCTATGGGAACCGCCGGAGCTAAACGTGTCATGTCATCTGCCACGTCATTCATATTCCGCACCTTCCAACAAACGGGTTA TGATAGCTACAAGAAGAAGGACGTGGATAGTGTCAGCTTGTCCATCGACCACATGGACGGGGTGGCCTACACCTTGAACAATGGGATCCACGTCAGCGCC AACTACATCGCGTCGTACAAAGAGGGTGAATTGTACAAAGAGCTAGAAGGGGTAATATACCACGAGATGACGCACGTGTGGCAATGGAATGGTAACGGAT ATACCCCGAGTGGTTTGATCGAAGGGATAGCCGATTACGTGAGGCTCAAGGCTAACTTGGCGCCTAGTCACTGGGTCCGACGGGGGGAAGGTGACAAGTG GGACCAAGGGTACGATGTTACGGCCAGGTTTCTGGATTATTGCGACGGGTTTGACCGTGAATTTGTGGCTAAGTTGAATGAGAAGATGAGACACGGGTAC AAGGAGAGCTTTTTCAAGGATTTACTTGGGTTCACCGTGCATGAGCTTTGGGTCCGGTATAAGGCTAAGTACGGCCAGTAA
AA sequence Show only first row Show all	>Lus10019803 pacid=23164025 polypeptide=Lus10019803 locus=Lus10019803.g ID=Lus10019803.BGIv1.0 annot-version=v1.0 MSRWYLLLVATLSAIELVDATNYTVLNTVPTSKGGKRFTYSMGTAGAKRVMSSATSFIFRTFQQTGYDSYKKKDVDSVSLSIDHMDGVAYTLNNGIHVSA NYIASYKEGELYKELEGVIYHEMTHVWQWNGNGYTPSGLIEGIADYVRLKANLAPSHWVRRGEGDKWDQGYDVTARFLDYCDGFDREFVAKLNEKMRHGY KESFFKDLLGFTVHELWVRYKAKYGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	5.2	0.7857
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	5.5	0.7567
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	7.5	0.7629
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	8.6	0.7237
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	17.2	0.8406
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	20.6	0.8282
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	22.8	0.8234
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10005324 [exp]	25.1	0.7415
AT5G66780			unknown protein		Lus10014313 [exp]	26.7	0.7468
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	28.9	0.7296

Compare expression of checked genes

Lus10019803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.