Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 179 / 4e-57 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 157 / 2e-48 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 38 / 0.0007 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014107 [exp] 312 / 1e-108 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 251 / 1e-85 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 197 / 7e-64 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 183 / 2e-58 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 161 / 6e-50 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 157 / 5e-48 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 149 / 3e-45 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 147 / 2e-44 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 147 / 2e-44 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 193 / 1e-62 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 189 / 5e-61 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 182 / 3e-58 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 181 / 1e-57 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 159 / 4e-49 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 48 / 1e-06 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019804 pacid=23163959 polypeptide=Lus10019804 locus=Lus10019804.g ID=Lus10019804.BGIv1.0 annot-version=v1.0 ATGTCATCCGCCACGTCATTCATATGGCAGACCTTCCAACAGTCTGGTCCCCCAAAGGACATCGACACGGTGGGGTTGTCCATCGAGGACATGGGCGGAG TGGCATACACGACGATCCCGGGGTACGTGATCCACGTCAGCGCAGGGTACATCGGGAGTTACGAGGGGGACGTGGAGGAGGAGTTCAAAGGCGTGGTGTC CCACGAGATGACGCACGTGTGGCAGTGGTTCGGGAACGGGCAGGCTCCGAGTTGGTTGATCGAAGGGATTGCGGATTACGTGAGGCTGAAGGCTAATCTC CCCGGGAAGAACTGGGTGGGGCCCGGGGAAGGTGACCGGTGGGACCAAGGGTATTCTGTTACGGCCAGGTTTTTGGATTACATTGGCGGGTTGAAGAGTG GGTTTGTTGCTGAGTTGAATGAGATGATGAAGGACGGGTATAGTGATGACTTTTTTCAGGTGTTGACCGTTACTGCCAACAAAACAAACTCCAAAATCCA CCGTGAACATCATCAAATCCTGAACCAGGGGCATTACACAAACCCAAACCCTAATCGAAGATCAAACTAA
AA sequence Show only first row Show all	>Lus10019804 pacid=23163959 polypeptide=Lus10019804 locus=Lus10019804.g ID=Lus10019804.BGIv1.0 annot-version=v1.0 MSSATSFIWQTFQQSGPPKDIDTVGLSIEDMGGVAYTTIPGYVIHVSAGYIGSYEGDVEEEFKGVVSHEMTHVWQWFGNGQAPSWLIEGIADYVRLKANL PGKNWVGPGEGDRWDQGYSVTARFLDYIGGLKSGFVAELNEMMKDGYSDDFFQVLTVTANKTNSKIHREHHQILNQGHYTNPNPNRRSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	0	1
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	1.0	0.9712
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	2.0	0.9106
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	3.5	0.8851
AT5G46030			unknown protein		Lus10014995 [exp]	5.3	0.8889
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	5.9	0.8888
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	7.9	0.8757
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	13.7	0.8552
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	13.7	0.9026
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	14.1	0.7867
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10014253 [exp]	23.9	0.7014

Compare expression of checked genes

Lus10019804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.