Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 182 / 1e-57 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014107 [exp] 318 / 2e-110 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10019804 [exp] 251 / 2e-85 AT2G15220 180 / 2e-57 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 231 / 6e-77 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 228 / 9e-76 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 204 / 6e-66 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 199 / 4e-64 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 194 / 5e-62 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 192 / 1e-61 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 191 / 4e-61 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094600 [exp] 231 / 5e-77 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 224 / 5e-74 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 220 / 1e-72 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 215 / 1e-70 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 194 / 1e-62 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019805 pacid=23163982 polypeptide=Lus10019805 locus=Lus10019805.g ID=Lus10019805.BGIv1.0 annot-version=v1.0 ATGAAGCGTTCTTGCAGCTGGATTCTGCTTCTGTCCCTCGCCGCCAGCCAGCTGGCAGACGCAGTTGACTACACCGTCACCAACAACTCCCCCAACTCCC ACGGCGGAAGTAGGTTTGACACTTTCATAGGCACCAGGGGAGCGAAGCACGACATGTCATCCGCCTCGTCGTTCATACGTGGCCTCTTCCGACAAGACGA ATCCCAGAAAGGCATCCACACCGTCGGATTGTCGATAGAGGACATGGACGGGGTGGCGTTCACGTCTATCCCGGGCTACTTGATCCACGTCAGCGCAGGG TACATCGGTAGCTACAATGGTGACGTGGAGGAGGAGTTTAAAGGGGTTGTTTACCACGAGATGACGCACGTGTGGCAATGGAATGGAAACGGACAGGCCC CGACCGGGTTGATTGAAGGGATCGCGGATTACGTGCTGCTGAAGGCTAATCTGCCAGCGAGGAACTGGGTGGGCCCCAGAGAAGGGGAGCGGTGGGACCA AGGGTATAATGTTACGGCGAGGTTTTTGAATTACTGTGATTCGGTGAGTAGTGGGTTCGTAGCTGAGTTGAATGAGATGATGAAGGATGGGTATAGTGAT GACTTTTTTCAGGAGTTGACCGGGCTGAGCGTTGACCAGCTGTGGAGTGATTACAAGCAAGTTTACGGCGGCCACTAG
AA sequence Show only first row Show all	>Lus10019805 pacid=23163982 polypeptide=Lus10019805 locus=Lus10019805.g ID=Lus10019805.BGIv1.0 annot-version=v1.0 MKRSCSWILLLSLAASQLADAVDYTVTNNSPNSHGGSRFDTFIGTRGAKHDMSSASSFIRGLFRQDESQKGIHTVGLSIEDMDGVAFTSIPGYLIHVSAG YIGSYNGDVEEEFKGVVYHEMTHVWQWNGNGQAPTGLIEGIADYVLLKANLPARNWVGPREGERWDQGYNVTARFLNYCDSVSSGFVAELNEMMKDGYSD DFFQELTGLSVDQLWSDYKQVYGGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	0	1
					Lus10024679 [exp]	4.0	0.7417
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	4.5	0.7443
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	10.8	0.7015
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	12.0	0.7015
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	13.2	0.7015
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	14.2	0.7015
AT4G23690			Disease resistance-responsive ...		Lus10028750 [exp]	14.5	0.6278
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	17.7	0.6806
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	17.7	0.6095
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	18.0	0.6691

Compare expression of checked genes

Lus10019805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.