Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 265 / 2e-90 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 239 / 5e-80 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 60 / 1e-11 Plant basic secretory protein (BSP) family protein (.1) AT2G42900 45 / 1e-05 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019807 [exp] 278 / 5e-95 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 276 / 2e-94 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 237 / 3e-78 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 233 / 2e-77 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 231 / 9e-77 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 231 / 1e-76 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 224 / 6e-74 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 223 / 3e-73 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 212 / 4e-69 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 304 / 1e-105 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 298 / 2e-103 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 289 / 1e-99 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 284 / 1e-97 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 272 / 5e-93 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 44 / 4e-05 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019806 pacid=23164080 polypeptide=Lus10019806 locus=Lus10019806.g ID=Lus10019806.BGIv1.0 annot-version=v1.0 ATGACGTCGATTAAATACCTTCTCCACGTCTTTATATCACTGGCAATGGTCCTCCTATCAACGACGACCACATCCGCGGTGGACTACTCCGTCACCAACA CCGCCACCGCCACCCTTGGCGGAGCCCGTTTCGACAACCAAATCGGCGCTGACTACACCCGTCAAACCCTCGCTGCCGCCACAAACTTTATCTGGGGCAC GTTCCGCCAGAACGACGCCTCAGCCCGAAAGCCCGTGCAGCAGGTCAGCGTGTTCATCGACGACATGGACGGAGTCGCCTACGCGTCCAACGGGGAGATC CACGTCAGCGCCAGGTACATCAACGGGTACTCGGGGGACTTGAGGAAGGAGTTCACGGGCGTAATGTACCACGAGATGACTCACGTGTGGCAGTGGAACG GGAATGGTGGGGGCCCCGGTGGGTTGATCGAAGGGATAGCGGATTTCGTGAGACTGAAGGCTAACCTGGCACCGAGCCATTGGGTGGGACCGGGGGGAGG AGACCGGTGGGACCAAGGGTACGATGTTACTGCGAGGTTTTTGGACTACTGTGAAGAGTTGAGGAGTGGGTTCGTGGCTGAGCTGAATCAGAAGATGCAG GGTGGGTATAGTGATGGGTTCTTCCAGGACTTGACTGGGAAGAGCGTTGACCAGCTTTGGAGGGATTATAAGGCGAAATATGCTAATAATTAA
AA sequence Show only first row Show all	>Lus10019806 pacid=23164080 polypeptide=Lus10019806 locus=Lus10019806.g ID=Lus10019806.BGIv1.0 annot-version=v1.0 MTSIKYLLHVFISLAMVLLSTTTTSAVDYSVTNTATATLGGARFDNQIGADYTRQTLAAATNFIWGTFRQNDASARKPVQQVSVFIDDMDGVAYASNGEI HVSARYINGYSGDLRKEFTGVMYHEMTHVWQWNGNGGGPGGLIEGIADFVRLKANLAPSHWVGPGGGDRWDQGYDVTARFLDYCEELRSGFVAELNQKMQ GGYSDGFFQDLTGKSVDQLWRDYKAKYANN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	2.0	0.9330
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10037121 [exp]	2.8	0.9075
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	3.5	0.8863
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	4.7	0.8890
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	8.3	0.8753
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	18.2	0.8773
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	19.3	0.8425
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	21.5	0.8841
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	25.7	0.8838
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	26.4	0.9071

Compare expression of checked genes

Lus10019806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.