Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 228 / 2e-75 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 214 / 4e-70 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 65 / 1e-13 Plant basic secretory protein (BSP) family protein (.1) AT2G42900 43 / 6e-05 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014106 [exp] 444 / 2e-160 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 271 / 2e-92 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 208 / 2e-67 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 206 / 7e-67 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 206 / 9e-67 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 205 / 3e-66 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 201 / 1e-64 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 202 / 2e-64 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 198 / 2e-63 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 264 / 1e-89 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 258 / 3e-87 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 255 / 3e-86 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 242 / 4e-81 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 239 / 6e-80 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 40 / 0.001 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10019807 pacid=23163988 polypeptide=Lus10019807 locus=Lus10019807.g ID=Lus10019807.BGIv1.0 annot-version=v1.0 ATGCCGACAAAAACACAATCTCGTCTCCAGTTCGCCTTACTACTAGCGGTTGTCTTCGTATCCACTCACACCCCTGTCGGCGGCGCCGTCGAATATTCCG TCACGAACAGAGCCGCCGCCACCCCAGGAGGCGCCCGCTTCGACAGAGAACTCGGCGCAGACTACAGCCGCCAACTCCTCTCCAAAGCCACGGAATTCAC CTGGGCCACGCTCCGACAAGACAAAAACCCGGCCGACAGAAAGCCCATTAAGCGAGTCAGCCTGTTCATCGACGACACCGACGGCGTAGCTTACGTGACC AACAGCAGTGAGATCCACGCGAGCGGCAGGTGGATCAGGGACATCCCCCCGCCTCCGAATTTCAACATCACAAAGGACTTCGAGGGCGTGATGTACCACG TGATAGCGAACGTGTGGCAGTGGAACGGGAACGGCAAGGCGTCGGTCAACCTGACCGAAGGGATCGCGGATTTCGTGAGGCTGAAGGCTAACCTGGCGCC GTACTACTGGGTGAAGCCCGGGGAAGGGGACCAGTGGGACGAAGGGTACGACGTTACGGCGAGGTTTTTGGAGTACTGCGATGGGTTGAGGAGTGGGTTC GTTGCTGAGCTGAATAAGAAGATGAGACGTGGGTATACTGATAGGTTCTTTCGGGAGTTGACTGGGAAGAGCGTTGACCAGCTTTGGAAGGATTATAAGG CGAAATATGCTAAATAA
AA sequence Show only first row Show all	>Lus10019807 pacid=23163988 polypeptide=Lus10019807 locus=Lus10019807.g ID=Lus10019807.BGIv1.0 annot-version=v1.0 MPTKTQSRLQFALLLAVVFVSTHTPVGGAVEYSVTNRAAATPGGARFDRELGADYSRQLLSKATEFTWATLRQDKNPADRKPIKRVSLFIDDTDGVAYVT NSSEIHASGRWIRDIPPPPNFNITKDFEGVMYHVIANVWQWNGNGKASVNLTEGIADFVRLKANLAPYYWVKPGEGDQWDEGYDVTARFLEYCDGLRSGF VAELNKKMRRGYTDRFFRELTGKSVDQLWKDYKAKYAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10019807 [exp]	0	1
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	2.4	0.9503
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	2.6	0.9569
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	3.7	0.9389
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024060 [exp]	4.9	0.9476
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	7.2	0.9257
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041828 [exp]	13.4	0.8929
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	15.5	0.9560
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	21.6	0.9471
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	36.1	0.9257
AT4G37290			unknown protein		Lus10011512 [exp]	36.3	0.9368

Compare expression of checked genes

Lus10019807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.