Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 471 / 8e-164 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 460 / 3e-159 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 458 / 1e-158 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 446 / 5e-154 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 307 / 7e-100 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 285 / 1e-91 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT4G15550 266 / 4e-84 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05675 260 / 7e-82 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 260 / 1e-81 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05530 250 / 5e-78 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014105 [exp] 887 / 0 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 736 / 0 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 541 / 0 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 276 / 6e-88 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 271 / 9e-86 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 270 / 4e-85 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 263 / 1e-82 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 261 / 5e-82 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 245 / 7e-76 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095100 [exp] 497 / 8e-174 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 490 / 5e-171 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095300 [exp] 488 / 3e-170 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G049600 [exp] 334 / 2e-110 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095500 [exp] 312 / 9e-102 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 305 / 9e-99 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.017G032300 [exp] 286 / 7e-92 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G055600 [exp] 286 / 1e-91 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.004G179300 [exp] 281 / 1e-89 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 280 / 3e-89 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019808 pacid=23164071 polypeptide=Lus10019808 locus=Lus10019808.g ID=Lus10019808.BGIv1.0 annot-version=v1.0 ATGGGATCCTCCTCGTCGGAGAAAGCCCTGCATGTGCTCCTTGTCTGCTTCCCCGGCCAAGGCCACATCAACCCCTTCCTCCGCCTCGCAAACCTCCTCG CCTCCCATGGCCTCCTCGTCACTTTCTGCATCAACAAAACCACCGGCGGCCAAATGAAAATCCCCAAGAACAACCTCCCCTCCGACAACAAACCCACCAT CCAGTTCGACTTCTTCGACGAGGGCCTCGACGATGAGCAAATCAAAGTCACACCGCTCGACCAACTCATGACCCGACTCGAAGAAACCGGTCGCAAGGCC TTACCCGGAATCATCGAGAAATACTCCGAAAACGGACAGCCTGTCTCCTGCCTAGTCAGCAACCCGTTCCTTCCTTGGGTATGCGACGTGGCCGTCTCGC TGGACATCCCTTCAGCCATCCTCTGGATGCAGTCATGCGCCTGCTTCTCTTCCTACTACCACTACCACAACAAACTCGCCCGTTTCCCGACCGAAAATGA CGCTGAATGCGACGTCGTTTTGCCGTCGATGCCCGTTCTGAAACACGACGAAGTCCCCAGCTTTCTCCACCCTTCCACGCCGTATCCTTTCCTGGGGACG GCAATCCTGGGACAGTTTGCTTACCTGGACAAAGTCTTCTGCATACTAATGGAAACTTTCCAGGAACTAGAGCCTGAGATTATCCGCCACGTGTCCACAT TGCACAATAATATCAAGCCGGTGGGCCCGCTGTGTCTTACAGGGAAAATCAGCGGTGGGGATCTCATGGAAGTCAACGACGACTGCATCAAGTGGCTGGA CGGGAAGGACAAGTCTTCGGTGGTGTACATCTCGATGGGGTCCGTCGTCTCGATGGACCCCACTCAGCGAGAAGAGTTTGCCTACGGGTTGATGAACTCC GGTTTGCCTTTCTTATGGGTGGTCAGACCCGGTTACGGAGAAGGCGATGAACCTGACCACCAAATCATCTTTCCCTCGGGTCTGGAAGGGAGAGGGAAAA TGGTGAGGTGGGCCCCGCAGGAGGAGGTGCTGAGGCACCCTGCGGTAGCATGTTTCGTGACTCACTGCGGATGGAACTCGACTATGGAAGCGATCAGTGC AGGGAAGCCTGTGGTGACGTTTCCCCAGTGGGGAGACCAAGTGACCGATGCAAAGTTTTTGGTAGACGTTTTCGAGGTAGGTGTGAGGATGGGGAGGGGA GCCACGACGACGAAGCTGGTGAAGAGGGACGAAGTGGAGAGGTGTGTGGTGGAGGCGACGGTGGGGGAGAAGGCGGAGGTGCTGAGGAGGAACGCGATGA GGTGGATGAAGGAAGCGGAGGCGGCTGTAGCAGAAGATGGGTCGTCAACGAGGAGTTTGTTGGAGTTTGTGGAGGAGGTTAAGAAGAGGAACGGTGCGAC GTTGTAG
AA sequence Show only first row Show all	>Lus10019808 pacid=23164071 polypeptide=Lus10019808 locus=Lus10019808.g ID=Lus10019808.BGIv1.0 annot-version=v1.0 MGSSSSEKALHVLLVCFPGQGHINPFLRLANLLASHGLLVTFCINKTTGGQMKIPKNNLPSDNKPTIQFDFFDEGLDDEQIKVTPLDQLMTRLEETGRKA LPGIIEKYSENGQPVSCLVSNPFLPWVCDVAVSLDIPSAILWMQSCACFSSYYHYHNKLARFPTENDAECDVVLPSMPVLKHDEVPSFLHPSTPYPFLGT AILGQFAYLDKVFCILMETFQELEPEIIRHVSTLHNNIKPVGPLCLTGKISGGDLMEVNDDCIKWLDGKDKSSVVYISMGSVVSMDPTQREEFAYGLMNS GLPFLWVVRPGYGEGDEPDHQIIFPSGLEGRGKMVRWAPQEEVLRHPAVACFVTHCGWNSTMEAISAGKPVVTFPQWGDQVTDAKFLVDVFEVGVRMGRG ATTTKLVKRDEVERCVVEATVGEKAEVLRRNAMRWMKEAEAAVAEDGSSTRSLLEFVEEVKKRNGATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	3.7	0.9489
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	5.5	0.9432
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	6.5	0.9395
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016470 [exp]	6.7	0.9377
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	8.1	0.9374
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	12.4	0.9273
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	12.6	0.9197
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	13.0	0.9390
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	13.4	0.8962
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	14.1	0.9265

Compare expression of checked genes

Lus10019808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.