Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15490 429 / 2e-147 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 408 / 5e-139 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 407 / 2e-138 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 402 / 5e-137 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 291 / 1e-93 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 273 / 6e-87 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT4G15550 266 / 4e-84 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05675 256 / 2e-80 UDP-Glycosyltransferase superfamily protein (.1) AT4G14090 253 / 4e-79 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 253 / 5e-79 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014105 [exp] 756 / 0 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019808 [exp] 734 / 0 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 494 / 2e-173 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 288 / 1e-92 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 264 / 5e-83 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 258 / 3e-81 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006353 [exp] 255 / 1e-79 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 247 / 1e-76 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 238 / 2e-73 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095100 [exp] 448 / 1e-154 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095300 [exp] 445 / 2e-153 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 438 / 1e-150 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G049600 [exp] 313 / 2e-102 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095500 [exp] 310 / 9e-101 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 300 / 7e-97 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.006G055600 [exp] 281 / 8e-90 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.007G140500 [exp] 274 / 3e-87 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 271 / 6e-86 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G389200 [exp] 270 / 2e-85 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019809 pacid=23164013 polypeptide=Lus10019809 locus=Lus10019809.g ID=Lus10019809.BGIv1.0 annot-version=v1.0 ATGGAATCGTCGCCGGACAAAGTCCCTCACGTACTCCTCGTCTGCTTCCCCGGCCAAGGCCACATCAACCCATTCCTCCGACTCGCCAACCTCCTCGCCT CCCACGGCCTCCTCGTCACTTTCTGCATCAACAAAACCACCGGCACCAAAATGAAACCCCCCGACAACAATACCTCCATCCAGTTCGACTTCTTCGACGA GGGCCTCGACGACGAGCAGATTAAAGCCACCCCACTCGACGAGTTCATGAACCGACTCGAAGAAACTGGTCGCAAGGCCTTACCCGAAATCATCCAAACC CACTCCCAAAAAGGGCAGCCTGTTTGCTGCATAGTCAACAACCCGTTTCTTCCTTGGGTGTCCGACGTGGCTGCCTCGCTGGATATCCCTTCAGCCATCT TCTGGATGCAGGCATGTGCGTCCTTTTCTTGTTACTACCACTACTACAAAAAACTCGCCCGTTTCCCGACCGAAGACGATCCCGAATCCGACGTCGTTTT GCCGTTTATGCCGGTCTTAAAACACGACGACATCCCAACCTTTCTCCTCCCTTCCACGCCGTATCCTTACCTGGCTACGGCGGTCTTCGACCAGTTTGCC TACCTGGACAACGACAAAGTCTTGTGCATATTAATGGAGACTTTCCAGGAGTTAGAGCCGGAGGTTATCCGTCACTTGTCCACATTCTTCCACGACAAAA TGATCAAGCCGGTGGGCCCGGTGTGTCTCGCTGGGAAAATAAGTGGTGGGGACCTCATGGAAGTAGACGACAATTGCATCAAATGGCTGGACGGCAAAGA CGAGTCATCGGTGGTCTACGTGTCGTTGGGGTCTATTGCGTCGATGGACCCCACTCAGAGGGAGGAGTTTGCTTACGGGCTTATAAACTCGGGCTTGTCC TTTTTATGGGTTGTTCGGCCCAGTCCGGGAGAAGGTGACGGACCGATTGTGTTTCCCCCGGGGCTGGAGGAGAATGGTAAAGTGGTGAAGTGGGCCCCGC AGGAGGAGGTGTTAAGGCATCCTGCGGTGGCGTGTTTCGTGACGCACTGTGGATGGAACTCCACGATGGAGGCGATTAGTGGTGGGAAGCCGGTGGTGAC GTTCTCGCAATGGGGGGATCAGGTGTTGGACGCGAAGCTTTTGGTGGATGTTTTTGAAGTGGGTGTGAAGTTGGGGAAGACGACGAAGCTGGTGAAGAGG GACGTTGTTGAGAGGTGTTTGGTGGAGGCGACGGTGGGGGAGAAGGCAGAGGTGTTGAGGAGGAACGCGACAAGGTTGAAGAAGGAAGCACAGGCGGCAG TAGTGAAGGATGGGTTGTCGACAAGGAGTATTGTGGAGTTTGTGGAGGAAGTTAAGAAGAGGAGCTTTTTGTGA
AA sequence Show only first row Show all	>Lus10019809 pacid=23164013 polypeptide=Lus10019809 locus=Lus10019809.g ID=Lus10019809.BGIv1.0 annot-version=v1.0 MESSPDKVPHVLLVCFPGQGHINPFLRLANLLASHGLLVTFCINKTTGTKMKPPDNNTSIQFDFFDEGLDDEQIKATPLDEFMNRLEETGRKALPEIIQT HSQKGQPVCCIVNNPFLPWVSDVAASLDIPSAIFWMQACASFSCYYHYYKKLARFPTEDDPESDVVLPFMPVLKHDDIPTFLLPSTPYPYLATAVFDQFA YLDNDKVLCILMETFQELEPEVIRHLSTFFHDKMIKPVGPVCLAGKISGGDLMEVDDNCIKWLDGKDESSVVYVSLGSIASMDPTQREEFAYGLINSGLS FLWVVRPSPGEGDGPIVFPPGLEENGKVVKWAPQEEVLRHPAVACFVTHCGWNSTMEAISGGKPVVTFSQWGDQVLDAKLLVDVFEVGVKLGKTTKLVKR DVVERCLVEATVGEKAEVLRRNATRLKKEAQAAVVKDGLSTRSIVEFVEEVKKRSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	5.0	0.9040
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	5.5	0.9126
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	5.9	0.8951
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	10.0	0.9056
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	10.5	0.9047
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	13.0	0.8804
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	15.9	0.8843
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	16.3	0.8840
AT2G31800			Integrin-linked protein kinase...		Lus10007432 [exp]	16.7	0.8524
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	17.0	0.8750

Compare expression of checked genes

Lus10019809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.