Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19450 530 / 0 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 507 / 0 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT2G21890 378 / 2e-130 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 374 / 9e-129 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G39330 372 / 1e-128 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37970 350 / 1e-119 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 328 / 3e-111 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 317 / 1e-106 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT1G72680 283 / 2e-93 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G63620 92 / 3e-20 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014104 [exp] 730 / 0 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 637 / 0 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 635 / 0 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10035956 [exp] 356 / 5e-122 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10002089 [exp] 355 / 1e-121 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10025706 [exp] 353 / 4e-121 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 353 / 9e-121 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10017285 [exp] 320 / 6e-108 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 318 / 4e-107 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095800 [exp] 550 / 0 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G307200 [exp] 383 / 1e-132 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G065300 [exp] 367 / 2e-126 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.016G078300 [exp] 367 / 3e-126 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G268600 [exp] 361 / 6e-124 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 360 / 4e-123 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 353 / 5e-121 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 320 / 1e-107 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 314 / 3e-105 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 301 / 1e-100 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019811 pacid=23164065 polypeptide=Lus10019811 locus=Lus10019811.g ID=Lus10019811.BGIv1.0 annot-version=v1.0 ATGGGTAGCATGGAAAAGGGAAGAACCATCGTTGGTTGGGCAGCTACAGACCCTTCCGGCGTCCTCGCTCCTCAAACTTTCACTCTCAGGAACACGGGCC CAGAAGATGTGTTCATCAAAGTTATGTGCTGCGGAATCTGCCACACTGATATCCACCAAATCAAGAACCACCTCGGCATGTCTCGTTACCCTATGGTTCC TGGACACGAAATGGTTGGCGAGGTATTGGAAGTGGGATCGGAGGTGACCAAGTTCAAAACCGGAGACATAGTCGGCGTCGGACTCCTCGTCGGATGCTGC CGGAGCTGCCGCGCATGTGATGCTGACATCGAGCAGTACTGCAACAAGAAAATCTGGTCATACAACGACGTCTATACCGACGGGAACCCAACTCAAGGCG GATTCGCCGAGTCCATGATTGTCGACCAGAAGTTTGTAGTGAAGATCCCAGAAGGGATGTCGCCCGAGCAAGCAGCTCCTTTGCTATGCGCAGGGGTGAC GGTTTACAGTCCGCTGAATCACTTCGGGCTGAAGAAGAGTGGGTTGAAAGGAGCGATCTTGGGGCTAGGAGGCGTTGGGCACATGGGAGTTAAGATTTCC AAAGCAATGGGACACCATGTGACTGTAATTAGCTCCTCTGATAAGAAAAAGGTTGAAGCACTGGATCATCTCGGAGCTGATGAGTATTTGGTCAGTTCGG ATTCGTCAACAATGGAACAAGCTGCTGATTCGTTCGATTACATAATCGACACTGTCCCTGTGAACCACCCGCTCGAGCCTTACCTATCGCTGTTGAAGGT CGATGGGAAGTTGATCTTGATGGGTGTGATCAACACCCCTCTTCAGTTCATAAGTCCTATGGTGATGCTAGGGAGGAAGGTGATAACAGGGAGCTTCATA GGGAGCATGAAGGAAACAGAGGAGATGCTGGAGTTCTGCAAGGATGAAGGGTTGAGCTCCATGATTGAGGTGGTGAAGATGGACTATGTGAATACGGCGT TCGAGCGGCTAGAGAAGAATGATGTGCGGTATAGGTTCGTGGTTGATGTTGCAGGAAGTGATCTTCAGCAGCAGTGA
AA sequence Show only first row Show all	>Lus10019811 pacid=23164065 polypeptide=Lus10019811 locus=Lus10019811.g ID=Lus10019811.BGIv1.0 annot-version=v1.0 MGSMEKGRTIVGWAATDPSGVLAPQTFTLRNTGPEDVFIKVMCCGICHTDIHQIKNHLGMSRYPMVPGHEMVGEVLEVGSEVTKFKTGDIVGVGLLVGCC RSCRACDADIEQYCNKKIWSYNDVYTDGNPTQGGFAESMIVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLNHFGLKKSGLKGAILGLGGVGHMGVKIS KAMGHHVTVISSSDKKKVEALDHLGADEYLVSSDSSTMEQAADSFDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKVITGSFI GSMKETEEMLEFCKDEGLSSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGSDLQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	2.4	0.9346
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	2.6	0.9375
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	4.9	0.9260
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	5.0	0.9229
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	5.2	0.8932
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	5.5	0.9226
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	5.7	0.9301
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	6.5	0.9146
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	6.5	0.8810
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	7.5	0.8774

Compare expression of checked genes

Lus10019811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.