Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19460 179 / 4e-57 Reticulon family protein (.1.2) AT2G15280 164 / 3e-51 Reticulon family protein (.1.2) AT4G23630 119 / 1e-32 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT4G11220 116 / 1e-31 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT1G64090 115 / 1e-31 RTNLB3 Reticulan like protein B3 (.1.2) AT2G46170 111 / 6e-30 Reticulon family protein (.1.2) AT3G10915 109 / 1e-29 Reticulon family protein (.1.2.3.4.5.6) AT3G54120 107 / 5e-29 Reticulon family protein (.1) AT5G41600 108 / 1e-28 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G61560 107 / 1e-28 Reticulon family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014102 [exp] 328 / 1e-115 AT3G19460 209 / 5e-69 Reticulon family protein (.1.2) Lus10027867 [exp] 221 / 3e-73 AT3G19460 184 / 1e-58 Reticulon family protein (.1.2) Lus10002815 [exp] 219 / 1e-72 AT3G19460 188 / 1e-60 Reticulon family protein (.1.2) Lus10038833 [exp] 117 / 2e-32 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10028753 [exp] 123 / 3e-32 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10014948 [exp] 117 / 5e-32 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027548 [exp] 115 / 3e-31 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10017533 [exp] 112 / 4e-30 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 110 / 2e-29 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300400 [exp] 226 / 3e-75 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.009G096200 [exp] 178 / 1e-56 AT2G15280 132 / 1e-38 Reticulon family protein (.1.2) Potri.015G027300 [exp] 124 / 7e-35 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.016G110200 [exp] 120 / 5e-34 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.014G091200 [exp] 120 / 2e-33 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.012G035600 [exp] 116 / 7e-32 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 111 / 5e-30 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 110 / 1e-29 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G165400 [exp] 107 / 1e-28 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 105 / 6e-28 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10019812 pacid=23163941 polypeptide=Lus10019812 locus=Lus10019812.g ID=Lus10019812.BGIv1.0 annot-version=v1.0 ATGGAAGGTAGCTCCGACAGTACATTCCCTCATCCTCGTCGCATATCCGTCCACCGGCTGCTTGGCGGGGGTTCAGTTGCCGATGTGCTGCTGTGGCGGA GATTGGGCGGCAGCTTGACGTTGTTATTGGCTTCGACGATTGCGTGGATTCTGTTCGAGATAGCAGATTACAGTCTGCTGACGTTCGTGGCGAATGTGTT GTTCCTCCTCGTCGCAATTCTCTTCCTATGGGCGAAATCTGCTTCTCTTCTCAATCGGCCACTGCCGCCAATTCCTGATCTGGAAATAACTGAGGAGACC ATTGACAAGGTTGCTCAAGTTCTTCAAGTTTATGTCAACCGTGTATTAGCAATTGGTTCTGACATCGCAATCGGAAGAAATTCGAAAGTTTTCTTACAGG TCGCTTTTACATTGTGGATCGTTTCTTATCTCGGTAGCCTCTGCGGTTTCCTTACTTTAGTGTACCTTGGGATTCTTCTCAGTCTTTCGATCCCGGTGCT TTATGACAAATACCAGCACCAGGTTGATGAAAATCTTCTTGTAGCACAGACAATTCTTGAAGCTCAGCTTAGGAAAATTGATCATCTTCTGAAGAAAGCT CCACTGCCATCAAACAAGGAAAAGAAGGTTCAATAG
AA sequence Show only first row Show all	>Lus10019812 pacid=23163941 polypeptide=Lus10019812 locus=Lus10019812.g ID=Lus10019812.BGIv1.0 annot-version=v1.0 MEGSSDSTFPHPRRISVHRLLGGGSVADVLLWRRLGGSLTLLLASTIAWILFEIADYSLLTFVANVLFLLVAILFLWAKSASLLNRPLPPIPDLEITEET IDKVAQVLQVYVNRVLAIGSDIAIGRNSKVFLQVAFTLWIVSYLGSLCGFLTLVYLGILLSLSIPVLYDKYQHQVDENLLVAQTILEAQLRKIDHLLKKA PLPSNKEKKVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	0	1
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	1.0	0.9053
AT1G12400			Nucleotide excision repair, TF...		Lus10006998 [exp]	1.4	0.8895
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	3.2	0.8724
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	4.5	0.8561
					Lus10007667 [exp]	5.0	0.8810
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	6.6	0.8707
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	10.6	0.8798
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	10.8	0.8818
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	11.5	0.8551
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	12.0	0.8470

Compare expression of checked genes

Lus10019812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.