Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014099 [exp] 344 / 2e-123 ND / Lus10014101 [exp] 342 / 1e-122 ND / Lus10019813 [exp] 340 / 1e-121 ND / Lus10028949 [exp] 300 / 6e-106 ND / Lus10024445 [exp] 232 / 3e-79 ND / Lus10037860 [exp] 222 / 2e-74 ND / Lus10029851 [exp] 207 / 1e-68 ND / Lus10000191 [exp] 207 / 1e-68 ND / Lus10039879 [exp] 206 / 3e-68 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 275 / 9e-96 ND / Potri.002G158600 [exp] 271 / 2e-94 ND / Potri.002G158700 [exp] 268 / 5e-93 ND / Potri.014G082700 [exp] 263 / 4e-91 ND / Potri.019G100100 [exp] 263 / 6e-91 ND / Potri.014G081900 [exp] 254 / 3e-87 ND / Potri.014G082000 [exp] 227 / 8e-77 ND / Potri.003G126200 [exp] 220 / 6e-74 ND / Potri.017G153100 [exp] 150 / 3e-46 ND / Potri.003G126400 [exp] 138 / 2e-42 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019815 pacid=23164085 polypeptide=Lus10019815 locus=Lus10019815.g ID=Lus10019815.BGIv1.0 annot-version=v1.0 ATGGCCGCGAACATCAAGGCACAGAGCTGCAAGCCAAGTGGTTACATAACAGGGATCACCCCCCCGCCGGGGCAATGCAACCAAGGTGAAGAATCAGACT GTTGTAAGGCGGGCAAACACTACACCACCTACAAATGTTCGCCACCGGTCACTGGCCGAACCAAGGCGACTTTGACTTGGAACAGCTTCGAGAAAGGAGG GAGTGGGGGTGGACCGTCTGAGTGCGATAACAAGTACCACCCTGATGACCATCCAGTGGTCGCTTTGTCGACCGGATGGTTCGACAACAAAAGCAGGTGT CTCAACTTTATCAACATCTATGGGAATGGGAAGAGTGTTAGGGCCATGGTGGTTGATGAGTGTGACTCTACTATGGGTTGTGATTCTGACCATGATTATC AGCCTCCTTGCCCTGACAACATCGTTGATGCGTCGAAAGCGGTCTGGAAAGCGTTGGGAGTGCCTGAAGATAATTGGGGTGATCTCGATATTTCGTGGTC CGATGCTTGA
AA sequence Show only first row Show all	>Lus10019815 pacid=23164085 polypeptide=Lus10019815 locus=Lus10019815.g ID=Lus10019815.BGIv1.0 annot-version=v1.0 MAANIKAQSCKPSGYITGITPPPGQCNQGEESDCCKAGKHYTTYKCSPPVTGRTKATLTWNSFEKGGSGGGPSECDNKYHPDDHPVVALSTGWFDNKSRC LNFINIYGNGKSVRAMVVDECDSTMGCDSDHDYQPPCPDNIVDASKAVWKALGVPEDNWGDLDISWSDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019815 [exp]	0	1
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	3.2	0.9031
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	3.5	0.8839
					Lus10005025 [exp]	5.9	0.8475
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	6.0	0.8385
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	7.0	0.8355
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	7.6	0.7340
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	7.7	0.8203
					Lus10002267 [exp]	8.9	0.7523
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	9.2	0.7947
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	9.4	0.7835

Compare expression of checked genes

Lus10019815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.