Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67280 243 / 9e-75 RLK receptor-like kinase (.1) AT2G23300 234 / 3e-71 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 224 / 6e-68 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 214 / 3e-64 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 187 / 3e-54 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 169 / 9e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 160 / 2e-44 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 145 / 3e-39 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 134 / 3e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 127 / 7e-33 IMK2 inflorescence meristem receptor-like kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014098 [exp] 498 / 1e-172 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 243 / 9e-75 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 241 / 4e-74 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 239 / 3e-73 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 237 / 9e-73 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 139 / 7e-37 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 138 / 2e-36 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 137 / 2e-36 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 128 / 6e-33 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300700 [exp] 296 / 4e-95 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 256 / 1e-79 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 253 / 1e-78 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 168 / 3e-47 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 164 / 4e-46 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 159 / 6e-44 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 156 / 3e-43 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 148 / 4e-40 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 142 / 5e-38 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 129 / 3e-33 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10019816 pacid=23163983 polypeptide=Lus10019816 locus=Lus10019816.g ID=Lus10019816.BGIv1.0 annot-version=v1.0 ATGAAGGAATTCGAAGGACAAGTGAGGCAAATTGCGAAGGTGAGGCATCCGAATCTGCTGAAGGTTCGTGGGTTTTGTTGGGGAGATGATGAGAAGCTCG TCATCTGTGATTACATCTCCAGTGGGAGTCTCGCCACCTCCGGCCACCGGAGGGTGGGTACGTCACCGTTTCATCTGCCACTAGAGGTCCGGTTCAAGAT AGCAAGAGGGTTAGCTCGGGGTCTAGCCTTCATTCACGACAAGAAGCAAGTCCACGGCAACATTAAGCCGAGCAACATTCTATTAGGGCAAGACATGGAT CCGATCATCTCGGATTTTGGCCTAGATCGTCTGATGATCAACTTTGCCGGCAATAACAAGACGGTAATTAACTCATCCGGTCGAAATTCAGGCAGTCAGC GGGCAGTGTCTGGTACTACGCCACTAGAGCACCACATTGCTAGCTGCAATGCCAACACCAATAGTAGTGTTATAACGATGGCGGCAAGTCCGTACACGAG TACACCGTCCTCTTCTGTGTCAGGATCGACTCCATATCAGGCGCCCGAGTCGTTGAAGAACCTAAAACCGAACCCTAAGTGGGATGTCTACTCGTTTGGG GCCGTGCTGCTTGAGCTTCTGACGGGTAGGGTTTTCAGCGAGTGGGAGCTGAGCCAATGGGCGGCCACCTCATGTTCGGACGACAGAGGGTGGGTGACTA GGCTGGTTGATGTGGCGATTCGGGCCGAGGTGGAAGCGAGGGAGGATGCCGTGGTGGCTTGTATGAAGCTGGGGTTTAGTTGTGCTTGTTTTGTGCCGCA AAAGAGACCGTCCATGAAGGAAGCTGTCCAAGTGTTGGAAAAGATCCCTCCCCACGCTCACTTTTAA
AA sequence Show only first row Show all	>Lus10019816 pacid=23163983 polypeptide=Lus10019816 locus=Lus10019816.g ID=Lus10019816.BGIv1.0 annot-version=v1.0 MKEFEGQVRQIAKVRHPNLLKVRGFCWGDDEKLVICDYISSGSLATSGHRRVGTSPFHLPLEVRFKIARGLARGLAFIHDKKQVHGNIKPSNILLGQDMD PIISDFGLDRLMINFAGNNKTVINSSGRNSGSQRAVSGTTPLEHHIASCNANTNSSVITMAASPYTSTPSSSVSGSTPYQAPESLKNLKPNPKWDVYSFG AVLLELLTGRVFSEWELSQWAATSCSDDRGWVTRLVDVAIRAEVEAREDAVVACMKLGFSCACFVPQKRPSMKEAVQVLEKIPPHAHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	0	1
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	7.2	0.8401
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	10.4	0.7515
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	14.8	0.7718
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10035413 [exp]	23.7	0.6885
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	25.6	0.7821
AT2G44430			DNA-binding bromodomain-contai...		Lus10021860 [exp]	26.1	0.6678
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	28.2	0.7928
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	31.7	0.7747
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	32.5	0.7943
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	43.3	0.7639

Compare expression of checked genes

Lus10019816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.