Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 208 / 4e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 179 / 2e-56 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014097 [exp] 337 / 6e-119 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001129 [exp] 177 / 2e-55 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10001128 [exp] 164 / 1e-50 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042636 [exp] 133 / 7e-39 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10042634 [exp] 122 / 1e-35 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096400 [exp] 236 / 3e-79 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.001G300800 [exp] 222 / 1e-73 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022700 [exp] 185 / 3e-59 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 184 / 4e-58 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096500 [exp] 137 / 1e-41 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF03629 [flax] [poplar] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Lus10019817 pacid=23164031 polypeptide=Lus10019817 locus=Lus10019817.g ID=Lus10019817.BGIv1.0 annot-version=v1.0 ATGTCATTCATCAACGCGGTGAAGGAGCGCACCGGATGCAGCGGCGGAAGAATCGGATTGGTGCCGTGCGCCGTGGGAGGGACTGCGATACGAGAGTGGG CGCGTGGGGAGGCGCTTTACGAGAATATGATACGCAGATCTAAAGAGAGCGTGAGATCTGGAGGTGGAGCGGAGATCAGGTGCTTGCTGTGGTACCAAGG TGAAAGCGACACGTCGACGGAACACGATGCGGTGACGTATCAAGGGAAGATGGAGGAGCTGATTCGGAATGTGAGGGAGGATTTGGGATTGCCTCAACTC CCTGCGATTCAGGTAGCATTGGCGTCGGGAGACCACAAGTATTTAGAGAAGGTTAGGGAAGCACAGCTTGGGATGGAGATGGAGAAAGTGGTGTGTGTGG ATGCAAAAGGGTTGAAGCTCAAGGAAGACAATCTTCATCTCACTACTGAAGCTCAGATTGAGCTGGGCCAAATGCTAGCCGATGCTTACCTCGCTAACTT TGTTGTCCCATCATCGCAATCACCATCTTCTTAA
AA sequence Show only first row Show all	>Lus10019817 pacid=23164031 polypeptide=Lus10019817 locus=Lus10019817.g ID=Lus10019817.BGIv1.0 annot-version=v1.0 MSFINAVKERTGCSGGRIGLVPCAVGGTAIREWARGEALYENMIRRSKESVRSGGGAEIRCLLWYQGESDTSTEHDAVTYQGKMEELIRNVREDLGLPQL PAIQVALASGDHKYLEKVREAQLGMEMEKVVCVDAKGLKLKEDNLHLTTEAQIELGQMLADAYLANFVVPSSQSPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34215			Domain of unknown function (DU...		Lus10019817 [exp]	0	1
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	4.6	0.8559
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10027485 [exp]	5.7	0.7937
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	6.3	0.8182
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	10.2	0.7822
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10033179 [exp]	10.8	0.7996
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	15.8	0.8394
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010623 [exp]	15.9	0.8104
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	16.4	0.8248
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028367 [exp]	16.7	0.8131
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10034506 [exp]	27.3	0.7367

Compare expression of checked genes

Lus10019817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.