Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 850 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 828 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 773 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 158 / 9e-46 unknown protein AT1G68010 98 / 1e-21 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G14780 97 / 2e-21 FDH formate dehydrogenase (.1) AT1G72190 96 / 3e-21 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 92 / 3e-20 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 88 / 7e-19 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 79 / 1e-15 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014096 [exp] 1022 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 951 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 423 / 2e-141 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 260 / 4e-84 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 96 / 2e-21 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 96 / 4e-21 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 97 / 8e-21 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 91 / 7e-20 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10032150 [exp] 91 / 2e-19 AT5G14780 618 / 0.0 formate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096600 [exp] 910 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 905 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 865 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 855 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 787 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 781 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 100 / 2e-22 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G052700 [exp] 89 / 3e-19 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G161300 [exp] 89 / 6e-19 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.002G151100 [exp] 84 / 1e-17 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10019818 pacid=23163948 polypeptide=Lus10019818 locus=Lus10019818.g ID=Lus10019818.BGIv1.0 annot-version=v1.0 ATGGCTACTTCCACCACCAGCCTGAACGTCCCATCGCTCAAGTCTTCATTCACCTCCATCACTTCCCTTCCACGACTCTCCATTGCCTCCCTCAACCTCC GCGCCGCCAACAACAACCGCCGCTTCATCGTCCTATCCTCCGCCGGGATCGGCGGAAAGCCTACCGTCCTGGTGGCAGAGAAGCTCGGCGAAGCTGGGTT GGATCTGCTGAAGGAGTTTGCCAACGTGGACTGCTCGTACAACCTCTCCCCTGAAGAACTCAACACCAAGATCTCGCTCTGCGATGCTCTGATCGTACGA AGCGCGACCAAGGTGTCTCGTGAGGTGTTCGAATCTTCCGGCGGAAGGTTGAAGGTCGTCGGGAGAGCTGGGGTTGGGATTGATAACGTGGATCTGGCTG CTGCGACGGAGCATGGTTGTTTGGTTGTTAATGCTCCGACGGCGAACACTGTTGCTGCTGCGGAGCATGGGATTGCTCTCTTGGCTGCTATGGCGAGGAA TGTCGCTCAGGCTGATGCCTCTGTTAAATCTGGGAAGTGGCAGAGGAACAAGTATGTGGGTGTCTCTCTAGTAGGGAAAACACTTGCAGTCATGGGTTTT GGAAAGGTTGGAACAGAGGTGACTAGGCGAGCCAAGGGGCTTGGAATGCACGTAATTGCACATGATCCGTATGCTCCTGCAGACCGTGCTCGTGCTATCG GTGTGGAGCTAGTGACCTTCGAAGAAGCCATAGCAACTGCGGATTTCATCTCCTTGCACATGCCTCTCACCCCTACAACGTCTAAGATGCTCAACGACGA AACTTTTGCAAAGATGAAGAAAGGAGTTAGAATCGTCAATGTGGCTCGTGGTGGTGTGATTGACGAAGAAGCTTTGGTTAGAGCATTGGACTCCGGAATT GTTGCTCAGGCTGCGCTAGATGTCTTCACTGTGGAACCGCCATCAGCAGATAGCAAGTTGGTGCTGCATGAGAATGTCACTGTGACTCCTCATCTTGGTG CTAGTACCGTTGAAGCTCAGGAAGGTGTTGCTATCGAAATTGCTGAAGCTGTTGTTGGAGCCTTGAAGGGAGAGCTTGCTTCTACTGCTGTCAACGCACC AATGGTACCTGCAGAGGTGCTATCGGAGCTGAAGCCATATGTCGAACTTGCTGAGAAACTTGGGCGACTGGCTGTTCAGCTAGTAACTGGAGGAAGTGGT GTCAAATCTGTGAAAGTGACTTACGCTTCGGCTAGAGCTCCTGACGACCTCGACACCAGGGTTCTACGTGCCATGATCACCAAAGGTCTTATCGAGCCGA TATCAAGTGTTTTTGTCAACTTGGTTAACGCAGACTTCACTGCCAAACAAAGGGGAGTGAGGATAACCGAAGAGCGCATAATCCTCGATGGATCTCCCGA GGAGCCCCTGGACTTCATCCAGGTTCAGATAGCCAATGTGGAGTCGAAATTCGCTAGTGCCATCTCGGAGACCGGAGAGATCAGGGTTGAGGGGCGTGTG AAGGATGGTGTTCCCCATCTGACGAGGGTGGGATCGTTCGAGGTCGATGTGAGCTTGGAAGGCAGCATTATACTGTGCCGTCAGGTTGATCAGCCCGGTA TGATCGGCAAGGTTGGAAGCGTTTTGGGTCAGGAGAATGTTAATGTCAGTTTCATGAGCGTTGGAAGAATTGCTCCCAGGAAGCAAGCTGTCATGGCAAT TGGTGTCGATGATCAGCCCAGCAAACAGACTCTGCAAAGGATTGGTGAAATCCCTGCTGTTGAGGAGTTTGTTTTCCTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10019818 pacid=23163948 polypeptide=Lus10019818 locus=Lus10019818.g ID=Lus10019818.BGIv1.0 annot-version=v1.0 MATSTTSLNVPSLKSSFTSITSLPRLSIASLNLRAANNNRRFIVLSSAGIGGKPTVLVAEKLGEAGLDLLKEFANVDCSYNLSPEELNTKISLCDALIVR SATKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGF GKVGTEVTRRAKGLGMHVIAHDPYAPADRARAIGVELVTFEEAIATADFISLHMPLTPTTSKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGI VAQAALDVFTVEPPSADSKLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVVGALKGELASTAVNAPMVPAEVLSELKPYVELAEKLGRLAVQLVTGGSG VKSVKVTYASARAPDDLDTRVLRAMITKGLIEPISSVFVNLVNADFTAKQRGVRITEERIILDGSPEEPLDFIQVQIANVESKFASAISETGEIRVEGRV KDGVPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGQENVNVSFMSVGRIAPRKQAVMAIGVDDQPSKQTLQRIGEIPAVEEFVFLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	0	1
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	1.0	0.9689
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	1.7	0.9564
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	2.0	0.9600
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	3.5	0.9411
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	4.0	0.9431
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	4.9	0.9389
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	5.9	0.9394
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	9.1	0.9144
AT2G22660			Protein of unknown function (d...		Lus10019239 [exp]	9.2	0.9216
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	11.2	0.9302

Compare expression of checked genes

Lus10019818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.