Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 82 / 1e-17 MADS MADS-box transcription factor family protein (.1) AT5G58890 81 / 6e-17 MADS AGL82 AGAMOUS-like 82 (.1) AT5G26580 58 / 4e-09 MADS AGL34 AGAMOUS-like-34 (.1) AT3G18650 58 / 4e-09 MADS AGL103 AGAMOUS-like 103 (.1) AT2G40210 58 / 5e-09 MADS AGL48 AGAMOUS-like 48 (.1) AT2G28700 57 / 7e-09 MADS AGL46 AGAMOUS-like 46 (.1) AT1G22590 55 / 7e-09 MADS AGL87 AGAMOUS-like 87 (.1.2) AT1G31630 57 / 1e-08 MADS AGL86 AGAMOUS-like 86 (.1) AT5G39750 56 / 1e-08 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1) AT5G27960 55 / 4e-08 MADS AGL90 AGAMOUS-like 90 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014095 [exp] 633 / 0 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10007371 [exp] 188 / 2e-56 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10020789 [exp] 174 / 1e-50 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10014578 [exp] 67 / 4e-12 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10032108 [exp] 61 / 3e-10 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10022316 [exp] 59 / 9e-10 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10000974 [exp] 58 / 9e-10 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10014883 [exp] 57 / 5e-09 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10017871 [exp] 53 / 3e-08 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 173 / 5e-50 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 168 / 3e-48 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 154 / 3e-43 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 120 / 7e-31 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.005G002400 [exp] 64 / 2e-11 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 59 / 2e-10 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.016G068132 [exp] 59 / 7e-10 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.004G222200 [exp] 57 / 4e-09 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.006G201700 [exp] 58 / 7e-09 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.012G062300 [exp] 55 / 2e-08 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10019819 pacid=23164010 polypeptide=Lus10019819 locus=Lus10019819.g ID=Lus10019819.BGIv1.0 annot-version=v1.0 ATGGGTCACAAAAGAGTGAAGATGGAGCTGATAAAGAACGACAGGAGCCGAATGCAGACTTACAAGAAAAGAAAGGCCAACTTGCTGAAGAAGATCAACG AGTTCACCGTTCTCTGCGACGTCAAAGCTTGCATCATCATCTTCGGCCCCAACACTAACAACAACGGCAGCAATCAGTTGGAGCTCGAGACGTGGGCGCC GGAATCCTGCAGCATTCAGGACCTAATCCAGCAGTACCGAACCTCCGACCAGCCGAGACGGTGCTACAGCGTGTCGGATTACTTCGCCGAGAAGAAGAAG CGGGTCGATGTCGAAATCGCCAAGCTGAGGAAGCAGATTCACAAGCAGCAGTTCCCTACTGAGGATGGTGGCGATCGGTTCAACCGGTATTCGGATGATG AGTTGAAGCTGATTTTGGGTTCGATCGACTCGAAGCTCGAAGCTGCTGATCAGAGGATTGCTGCTCTGAACGCAAAACGGAATCTGGGGATAGTTCATCA TCAGGCTGTTCCAATTACTACCTGGCCACAGAATAATAATAATCTTGTGGAAGTTGGGTTTGGAATTGAGAGGGAATTTGATGATGATGATGATGTTAAT GTTGTTCATCATCAGGATCTGAGCCGCCATTGCCAGTATGAACAGCAGAACTCGGTTAATGCACTGCTGGAGCAGAATTCTAATCATAACAACAATTACT TTGACAATTATTATCAGAATGATAATAATAATTCATTCAGCTTTCCAGCTGAAGGGCATAATTTCTTTCCTGAGGTTCCTTTCTGTTTCCAGCCAGGGGA GCTAACAAGTCCGTTAATGGCGGATTTTGGTTCTCCTGAGAAAGGATTCAACTTTGGGCTGATGCCGGCGCAAAGGTATCCTAATTTCCTGATGCAGCCG GAGATGACGATAAAGAATCAAGTAGTGGGGAGATCAAACGGGATGATTCATCATGGCCTGCTCAATTCCTTGCCTGGAACTAGGACTTGTACTGGTACTA GTAGTCGTCTCTGGAATTTCGATTCTGCTGGGAGTTCGGATGCAGGGATGAGCTTTATAGCGTCTTCGAGTTACAAGCAGCAGTTTCAGGTTTCTCCCAT GGCGGCCGGGTTTGCTAATCCAAGGATGTTCGATGAGTCGATTGGAGGGGGCTTCGAGTTTGGTGGAGGAGAGCATAAGCTCTAG
AA sequence Show only first row Show all	>Lus10019819 pacid=23164010 polypeptide=Lus10019819 locus=Lus10019819.g ID=Lus10019819.BGIv1.0 annot-version=v1.0 MGHKRVKMELIKNDRSRMQTYKKRKANLLKKINEFTVLCDVKACIIIFGPNTNNNGSNQLELETWAPESCSIQDLIQQYRTSDQPRRCYSVSDYFAEKKK RVDVEIAKLRKQIHKQQFPTEDGGDRFNRYSDDELKLILGSIDSKLEAADQRIAALNAKRNLGIVHHQAVPITTWPQNNNNLVEVGFGIEREFDDDDDVN VVHHQDLSRHCQYEQQNSVNALLEQNSNHNNNYFDNYYQNDNNNSFSFPAEGHNFFPEVPFCFQPGELTSPLMADFGSPEKGFNFGLMPAQRYPNFLMQP EMTIKNQVVGRSNGMIHHGLLNSLPGTRTCTGTSSRLWNFDSAGSSDAGMSFIASSSYKQQFQVSPMAAGFANPRMFDESIGGGFEFGGGEHKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	0	1
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019961 [exp]	2.0	0.7349
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	8.2	0.6682
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	9.6	0.6645
					Lus10001379 [exp]	10.4	0.6574
AT5G04885			Glycosyl hydrolase family prot...		Lus10005706 [exp]	10.7	0.6568
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	11.2	0.6511
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	16.9	0.6328
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	17.2	0.6276
					Lus10021773 [exp]	18.2	0.6276
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	19.2	0.6276

Compare expression of checked genes

Lus10019819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.