Plant FIBer expression Database

Lus10019820 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19490 757 / 0 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
AT1G49810 548 / 0 ATNHD2 SODIUM:HYDROGEN ANTIPORTER 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014094
[exp]
940 / 0 AT3G19490 858 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G096700
[exp]
788 / 0 AT3G19490 687 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Potri.001G301000
[exp]
779 / 0 AT3G19490 694 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Lus10019820 pacid=23163962 polypeptide=Lus10019820 locus=Lus10019820.g ID=Lus10019820.BGIv1.0 annot-version=v1.0
ATGGCGTCTTTCTCAATTGGATCACACCACTTCAGCCCAGCGTCCCAATTCAAGAGACAGTCGCTCCACTCTTCATTTTCTCCAGCCTCCTCTTCTTCTT
CTTCTTCCCCTTCTTTTGGATCTTCTAGCTGTAGATTTAGATGTCCAACACGGTTCGGGAGTGGGTTGCTGGCCAGAGCTGAGGATAAGGCTAGGGACTC
TTCTTATTCGTCGCCAATTCAGCAGGATGTGACTGAAGAATTTGGGAACTGTGATCCTTTGTGCTCAGTTGATGACACGAGTTCGGAACAGTATGAAGCC
AATTACCAGCCAAAGACTGATTTGTTGAAAGCTCTTGCAGTAGTTGGGGCAGCTGCAACTGGTGCAGTAGCAATTAACCACTCCTGGGTGGCAGCTAATC
AGGATCTTGCTATGGCATTGCTGTTTGGATTAGGATATGCCGGAATCATCTTTGAAGAGTCACTTGCTTTCAATAAAAGTGGGGTGGGATTGTTGATGGC
CGTCAGCTTATGGGCAGTTCGAAGTATTGGAGCTCCTTCAGTTGATATTGCTGTCTCAGAGCTCCATCAAGCATCAGGAGAAGTTAGTGAAATAGTATTT
TTCCTGCTTGGTGCGATGACAATTGTTGAGATCGTCGATGCTCATCAAGGGTTTAAGCTAGTCACTGACAATATAACGACTCGAAAGCCACGGGCTCTGC
TTTGGGTGATTGGCTTAGTGACCTTTTTCCTCAGTGCAATCCTTGATAACCTGACATCTACTATCGTCATGGTTTCTTTATTGAGGAAACTCGTTCCACC
ATCTGAATACCGCAAGATGTTAGGAGCGGTTGTTGTGATTGCAGCTAATGCTGGAGGCGCATGGACTCCAATTGGTGACGTTACAACCACTATGCTTTGG
ATCCATGGTCAGATAACCACATTGCCAACGATAAAGGACTTGTTTATACCTTCCGCTGTTTCTCTTGCCGTACCCCTTGCTCTTATGTCCCTGACCAGTG
AAGTCAACGGGAAAGGACAGGACAATGCCGATGTCTTAGCATCTGAACAGATGGCTCCTCGAGGAAAGCTTGTTTTCGCTATCGGTCTTGGAGCTTTGAT
CTTTGTTCCTGTGTTCAAGGCCCTAACCGGGTTGCCTCCTTACATGGGAATGCTTCTCGGGCTTGGAGTTCTTTGGATTGTCACAGATGCCATTCACTAT
GGTGAATCAGACCGCCAGAGGTTGAAAGTACCACAGGCTTTATCTCGCATCGACACCCAAGGAGCCCTTTTCTTCCTCGGAATCCTTCTATCCGTTAGCA
GTTTGGAATCAGCTGGGATTCTCCGAGAACTTGCAAACTATCTGGATGCTCATATACCGAACTTTGAGCTTGTGGCGAGTGCAGTTGGAGTCGTGTCAGC
AATCATTGACAATGTTCCCCTTGTTGCTGCGACGATGGGAATGTACGACCTGACCTCTTTCCCTCAAGATTCCGAGTTCTGGCAGTTGATCGCTTACTGT
GCTGGCACCGGTGGATCCATGCTGGTGATTGGCTCAGCGGCTGGAGTTGCATTCATGGGGATGGAGAAGGTGGATTTCTTCTGGTACTTGAAGAAGGTTA
GTGGTTTCGCTTTAGCTGGTTATGCTGCGGGAATTGCAGCATACTTGGCTGTTCATAACCTGAACATTTCTCTACCAACAACATTGGCCGAGGTCCCATT
CCTTTCCGGTTCGTGA
AA sequence
>Lus10019820 pacid=23163962 polypeptide=Lus10019820 locus=Lus10019820.g ID=Lus10019820.BGIv1.0 annot-version=v1.0
MASFSIGSHHFSPASQFKRQSLHSSFSPASSSSSSSPSFGSSSCRFRCPTRFGSGLLARAEDKARDSSYSSPIQQDVTEEFGNCDPLCSVDDTSSEQYEA
NYQPKTDLLKALAVVGAAATGAVAINHSWVAANQDLAMALLFGLGYAGIIFEESLAFNKSGVGLLMAVSLWAVRSIGAPSVDIAVSELHQASGEVSEIVF
FLLGAMTIVEIVDAHQGFKLVTDNITTRKPRALLWVIGLVTFFLSAILDNLTSTIVMVSLLRKLVPPSEYRKMLGAVVVIAANAGGAWTPIGDVTTTMLW
IHGQITTLPTIKDLFIPSAVSLAVPLALMSLTSEVNGKGQDNADVLASEQMAPRGKLVFAIGLGALIFVPVFKALTGLPPYMGMLLGLGVLWIVTDAIHY
GESDRQRLKVPQALSRIDTQGALFFLGILLSVSSLESAGILRELANYLDAHIPNFELVASAVGVVSAIIDNVPLVAATMGMYDLTSFPQDSEFWQLIAYC
AGTGGSMLVIGSAAGVAFMGMEKVDFFWYLKKVSGFALAGYAAGIAAYLAVHNLNISLPTTLAEVPFLSGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Lus10019820
[exp]
0 1
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Lus10036636
[exp]
4.1 0.9225
AT5G08720 unknown protein Lus10025701
[exp]
4.2 0.9221
AT2G21340 MATE efflux family protein (.1... Lus10041955
[exp]
4.9 0.9142
AT4G01050 TROL thylakoid rhodanese-like (.1) Lus10029448
[exp]
6.0 0.9121
AT5G17790 VAR3 VARIEGATED 3, zinc finger (Ran... Lus10013630
[exp]
6.2 0.8886
AT3G15354 SPA3 SPA1-related 3 (.1) Lus10043323
[exp]
10.0 0.9096
AT4G37380 Tetratricopeptide repeat (TPR)... Lus10010385
[exp]
11.7 0.9061
AT2G21340 MATE efflux family protein (.1... Lus10017964
[exp]
13.0 0.8871
AT5G15390 tRNA/rRNA methyltransferase (S... Lus10032993
[exp]
13.3 0.8471
AT5G04900 NOL NYC1-like (.1) Lus10033408
[exp]
14.4 0.8969

Lus10019820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.