Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34190 119 / 6e-35 SEP1 stress enhanced protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014093 [exp] 278 / 6e-98 AT4G34190 116 / 7e-34 stress enhanced protein 1 (.1) Lus10027871 [exp] 137 / 6e-42 AT4G34190 128 / 1e-38 stress enhanced protein 1 (.1) Lus10002821 [exp] 121 / 2e-35 AT4G34190 119 / 2e-34 stress enhanced protein 1 (.1) Lus10002818 [exp] 79 / 3e-20 AT4G34190 87 / 1e-23 stress enhanced protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301100 [exp] 134 / 4e-41 AT4G34190 140 / 1e-43 stress enhanced protein 1 (.1) Potri.009G096800 [exp] 133 / 2e-40 AT4G34190 130 / 1e-39 stress enhanced protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019821 pacid=23163991 polypeptide=Lus10019821 locus=Lus10019821.g ID=Lus10019821.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCAGTAGCTGTTCATCTCTCACCGTCGCTCTCCCGCTCCGTTCGCGATGCTTGCCCAGTGATTTCTGCATCGATACGTTCTGTTTCACCGC TATTACCCACTTCCCGTTCCGGCCGAATTGGCTCCGGTTTCCCGACTGGGTCTCCTCTGTTGAGATCAAGAAGCATAGTTATGAACAGGTGCGCAAGAAG AAGAGCAGCTTCAGTAATGTCTATAAGAAGTGAGCAAACCAGCAAGGAAGGGAACAGTTTGGATGTGTGGTTAGGGCGGATTGCAATGATGGGCTTTGCT TTGGCTATCACCGTCGAAGTATCCACAGGGAAAGGGCTCATTGAGAATTTCGGGCTGGTGAGCCCTTTGCCTACGGCTGCGTTGGCAGTAATGGGACTGG TTGGTGGTGTCACTGCAGTCTACATATACCAAACCTCCTCATCTAAAAGCTGA
AA sequence Show only first row Show all	>Lus10019821 pacid=23163991 polypeptide=Lus10019821 locus=Lus10019821.g ID=Lus10019821.BGIv1.0 annot-version=v1.0 MAAAVAVHLSPSLSRSVRDACPVISASIRSVSPLLPTSRSGRIGSGFPTGSPLLRSRSIVMNRCARRRAASVMSIRSEQTSKEGNSLDVWLGRIAMMGFA LAITVEVSTGKGLIENFGLVSPLPTAALAVMGLVGGVTAVYIYQTSSSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10019821 [exp]	0	1
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	6.5	0.9055
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	9.2	0.9035
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	11.9	0.8982
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10021627 [exp]	12.4	0.8908
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	13.6	0.8913
AT5G19540			unknown protein		Lus10023641 [exp]	15.1	0.8484
AT3G61870			unknown protein		Lus10012617 [exp]	16.2	0.8973
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	18.7	0.8937
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	19.2	0.8828
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	21.9	0.8793

Compare expression of checked genes

Lus10019821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.