Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35220 389 / 1e-137 Cyclase family protein (.1) AT4G34180 332 / 2e-115 Cyclase family protein (.1) AT1G44542 325 / 1e-112 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014092 [exp] 456 / 1e-160 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10014091 [exp] 315 / 8e-109 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10027872 [exp] 294 / 4e-101 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10031453 [exp] 264 / 3e-88 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001508 [exp] 263 / 8e-88 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10001509 [exp] 258 / 4e-86 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10031454 [exp] 258 / 7e-86 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10019823 [exp] 98 / 8e-26 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301501 [exp] 422 / 7e-151 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.001G301600 [exp] 392 / 7e-139 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 382 / 9e-135 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097300 [exp] 341 / 3e-119 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.009G097201 [exp] 302 / 9e-105 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10019822 pacid=23164049 polypeptide=Lus10019822 locus=Lus10019822.g ID=Lus10019822.BGIv1.0 annot-version=v1.0 ATGAACTCTTCAGTCATCTTCCTCCTAATCATTTCCTTCTCGTCCTTCGCCGCGGCCTCCTCCTCCGCCGCCTACCCGACCATCCCCGGGACAACAGAAA CCTCCTCCTTCTCCACCGCTCCATCCGATGACCTAATCCCGGTCCGGCGAGAGGTCTACGGCGACGGGAAGATCTTCGACATAACCCACAGGTACACGGC CGACTTGCCCGTCTGGGAGAGCGACGATGGGTTAGGTCAGTTCTTGTGGCTGCCCAAGAGTATGAAGAACGGGTCGCTAGCTAATAACTCCGAGATGAAG CTCCCTGCACATACTGGAACTCACGTTGACGCTCCTGGACATGTGTTCGATCACTACTATGATGCTGGGTTCGATGTCGATACTCTCGACTTGGAAGTTC TTAATGGTCCTGCTCTGCTAGTTGATGTGCCCAGAGATACCAACCTTACTGCTGAAGCTATGAAGGCGTTAAACATACCCAAGGGTGTACGCCGTGTGAT TTTCAGGACGCTAAACACTGACAGGAAGCTTATGTTCAAAAAGCAATTTGACACGAGCTATGTTGGATTTACAAAGGATGGGGCTCAGTGGTTGGTAGAC AACACTGACATCAAGTTCGTTGGAGTTGATTATCTGTCTGTTGCTGCCTGGACCGATTTAATCCCAGCACATCATGTTTTTCTACATGGCAAGGAAATCA TCCTTGTCGAAGCCTTGAAACTCGACGGCATCCAACCAGGGCTACATTCAGTGCATTGCTTACCTCTTAGGTTGATCCACGCCGAGGGATCTCCAATCAG ATGCATTCTCATGAAATGA
AA sequence Show only first row Show all	>Lus10019822 pacid=23164049 polypeptide=Lus10019822 locus=Lus10019822.g ID=Lus10019822.BGIv1.0 annot-version=v1.0 MNSSVIFLLIISFSSFAAASSSAAYPTIPGTTETSSFSTAPSDDLIPVRREVYGDGKIFDITHRYTADLPVWESDDGLGQFLWLPKSMKNGSLANNSEMK LPAHTGTHVDAPGHVFDHYYDAGFDVDTLDLEVLNGPALLVDVPRDTNLTAEAMKALNIPKGVRRVIFRTLNTDRKLMFKKQFDTSYVGFTKDGAQWLVD NTDIKFVGVDYLSVAAWTDLIPAHHVFLHGKEIILVEALKLDGIQPGLHSVHCLPLRLIHAEGSPIRCILMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	0	1
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	1.0	0.8930
AT1G56423			unknown protein		Lus10020695 [exp]	1.4	0.8904
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	4.2	0.8251
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	5.5	0.8715
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	7.7	0.8438
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	9.0	0.8458
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	10.2	0.8565
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	12.2	0.8308
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	12.4	0.8467
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	13.4	0.8419

Compare expression of checked genes

Lus10019822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.